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ome / omero-py

Python project containing Ice remoting code for OMERO
https://www.openmicroscopy.org/omero
GNU General Public License v2.0
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Python 3.9 support #281

Closed will-moore closed 3 years ago

will-moore commented 3 years ago

Trying to start the server on Python 3.9:

$ omero admin start
Traceback (most recent call last):
  File "/opt/anaconda3/envs/omeroweb/bin/omero", line 8, in <module>
    sys.exit(main())
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/main.py", line 125, in main
    rv = omero.cli.argv()
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/cli.py", line 1784, in argv
    cli.invoke(args[1:])
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/cli.py", line 1222, in invoke
    stop = self.onecmd(line, previous_args)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/cli.py", line 1299, in onecmd
    self.execute(line, previous_args)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/cli.py", line 1381, in execute
    args.func(args)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/plugins/prefs.py", line 79, in open_and_close_config
    return func(*args, **kwargs)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/plugins/admin.py", line 832, in start
    self.startasync(args, config)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/plugins/prefs.py", line 79, in open_and_close_config
    return func(*args, **kwargs)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/plugins/admin.py", line 784, in startasync
    self.rewrite(args, config)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/plugins/prefs.py", line 79, in open_and_close_config
    return func(*args, **kwargs)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/plugins/admin.py", line 1161, in rewrite
    clear_tail(template_xml)
  File "/opt/anaconda3/envs/omeroweb/lib/python3.9/site-packages/omero/plugins/admin.py", line 1158, in clear_tail
    for child in elem.getchildren():
AttributeError: 'xml.etree.ElementTree.Element' object has no attribute 'getchildren'

Useful link for addressing that error: https://stackoverflow.com/questions/10408927/how-to-get-all-sub-elements-of-an-element-tree-with-python-elementtree

Also failed to run integration tests on Python 3.9 recently.