Big Images_From_ROIs (rebased onto dev_5_2)

jburel commented 7 years ago

This is the same as gh-115 but rebased onto dev_5_2.

This allows the Images_From_ROIs.py script to create tiled images from 'Big' ROIs. With contributions from @drmatthews. See https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7565

To test:

create Rectangle ROIs of various sizes on a Big image. Some should be bigger than ~3k x 3k and some smaller
Run the Images_From_ROIs script on the image. It will take a long time, but should create Big images for Big Rectangles and regular non-tiled images for the smaller Rectangles.

The last 2 commits were not in the initial PR but are required

jburel commented 7 years ago

--rebased-from #115

jburel commented 7 years ago

Due to travis/flake8 change, I have also included commit from https://github.com/ome/scripts/pull/126 in this PR.

To test:

Check that kymograph and plot_profile and Image_from_rois can handle roi w/o z or t.
The changes made in figure script will be tested via integration test see https://github.com/openmicroscopy/openmicroscopy/pull/4979

jburel commented 7 years ago

https://10.0.51.107:8443 tested manually big images, kymograph and plot_profiles

also no integration test failures for the figure scrips changes

jburel commented 7 years ago

Merging for next release

ome / omero-scripts