search

ome / omero-scripts

Core OMERO Scripts
https://pypi.org/project/omero-scripts/
12 stars 32 forks source link

Script to delete annotations #150

Closed dominikl closed 5 years ago

dominikl commented 5 years ago

I would find a script like this very helpful when testing scripts or preparing training workflows. These tasks usually create lots of file attachments, tables, ROIs, etc. Deleting them manually to get back to a clean state is a pain. With this script one can simply select a project/dataset/image/... and clean it from all annotations/rois.

If it's not generally useful, I just close the PR again...

will-moore commented 5 years ago

I can see this being useful for us (OME Training team) but I'm not sure that is enough to justify adding to the scripts we ship. But, many of those scripts are really just examples anyway, so I'm OK to add more. For training, we have https://github.com/ome/training-scripts/blob/v0.6.0/maintenance/scripts/delete_annotations.py and https://github.com/ome/training-scripts/blob/v0.6.0/maintenance/scripts/delete_ROIs.py

dominikl commented 5 years ago

Is there a different repository? This whole omero-user-scripts thing seems to be rather historic, isn't it?

jburel commented 5 years ago

As @will-moore indicated, training-script repo is the best place for this type of scripts Are you thinking of https://github.com/ome/omero-user-scripts?

joshmoore commented 5 years ago

Not sure if we already having something similar, but one option would be to split this into a discovery tool like bin/omero annotations list (similar to FindChildren and FindParents) and then have the ability to pipe that result to bin/omero delete.

cc: @mtbc

mtbc commented 5 years ago

This is different from just bin/omero delete Project/Roi:1234 or whatever I guess?

dominikl commented 5 years ago

Whatever, I'd just like to have button (/script) in Web to simply reset any analysis results on a project. Thought that might be generally useful. Closed now.