search

ome / omero-scripts

Core OMERO Scripts
https://pypi.org/project/omero-scripts/
12 stars 32 forks source link

populate metadata error handling #189

Closed will-moore closed 2 years ago

will-moore commented 2 years ago

E.g. see errors reported at https://forum.image.sc/t/how-to-use-cellprofiler-per-image-results-from-plate-analyses-as-source-for-omero-parade/59894/19

The actual error ValueError: Empty Double or Long value. Use --allow_nan to convert to NaN is buried among lots of others. including:

Traceback (most recent call last):
  File "./script", line 124, in populate_metadata
    ctx.parse_from_handle(data)
AttributeError: 'ParsingContext' object has no attribute 'parse_from_handle'

Probably the metadata plugin needs to do better too.