Closed jburel closed 6 years ago
The R notebook still works, but the CellProfiler notebook doesn't. Running the first cell gives UnboundLocalError: local variable 'jdk_dir' referenced before assignment
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That is due to the fact that I brought R back ( I removed it at the start) Ok I know what the problem is
Both notebooks work now. Good to merge 👍
Didn't get a chance to play with it yet, but certainly looking forward to it. Merging. (Only thing we may want to do in a follow-up is optimize the image size to speed up pull times)
When we have a better idea of what we need for training and IDR some of it will be moved to jupyter-docker this could be a good opportunity to do that
Install the latest version of CellProfiler (v3.1.3) and fix the notebook
Available at https://ome-lochy.openmicroscopy.org/jupyterhub-training/
To test:
To build and test it locally:
docker build -t training-notebooks .
docker run -it -p 8888:8888 training-notebooks