Notebooks update - Githubissues

ome / training-notebooks

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO

3 stars 10 forks source link

Notebooks update #4

Closed jburel closed 6 years ago

jburel commented 6 years ago

Remove dependencies
Fix URL

To test:

Check that the python notebooks are passing

Accessible at https://ome-lochy.openmicroscopy.org/jupyterhub-training

manics commented 6 years ago

Looks fine. pixels.getPlane() is failing for me but that should be unrelated to this PR.

jburel commented 6 years ago

Which server did you use? Did you change the image_id?

manics commented 6 years ago

outreach user-1. The image loaded but getPlane failed.

jburel commented 6 years ago

Something to do with the reader serverStackTrace = ome.conditions.InternalException: Wrapped Exception: (java.lang.NullPointerException): null at loci.formats.in.DicomReader.openBytes(DicomReader.java:292) this will require investigation not related to this PR