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ome / training-notebooks

A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO
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Fix #48

Closed jburel closed 4 years ago

jburel commented 4 years ago

This PR

output when run on idr-analysis this morning

z:195 t:1 c:2 y:241 x:246
Downloading image B5_C3.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B5_C3.tif
Saving Probabilities as an Image in OMERO
z:195 t:1 c:2 y:241 x:246
Downloading image B5_C2.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B5_C2.tif
Saving Probabilities as an Image in OMERO
z:195 t:1 c:2 y:269 x:234
Downloading image B5_C1.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B5_C1.tif
Saving Probabilities as an Image in OMERO
z:257 t:1 c:2 y:210 x:253
Downloading image B4_C3.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B4_C3.tif
Saving Probabilities as an Image in OMERO
z:257 t:1 c:2 y:284 x:281
Downloading image B4_C2.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B4_C2.tif
Saving Probabilities as an Image in OMERO
z:257 t:1 c:2 y:226 x:220
Downloading image B4_C1.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B4_C1.tif
Saving Probabilities as an Image in OMERO
z:239 t:1 c:2 y:281 x:325
Downloading image B3.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B3.tif
Saving Probabilities as an Image in OMERO
z:237 t:1 c:2 y:218 x:212
Downloading image B2_C2.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B2_C2.tif
Saving Probabilities as an Image in OMERO
z:237 t:1 c:2 y:275 x:481
Downloading image B2_C1.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B2_C1.tif
Saving Probabilities as an Image in OMERO
z:236 t:1 c:2 y:263 x:278
Downloading image B1_C2.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B1_C2.tif
Saving Probabilities as an Image in OMERO
z:236 t:1 c:2 y:275 x:271
Downloading image B1_C1.tif
Image converted
running ilastik using /tmp/tmpovtj9ft2/pixel-class-wednesday.ilp and B1_C1.tif
Saving Probabilities as an Image in OMERO
done
pwalczysko commented 4 years ago

Ready to merge fmpov.