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omegahh / DeepHiC

A GAN-based method for Enhancing Hi-C data
MIT License
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Missing a parameter -lrc in the tutorial #1

Open GangLiTarheel opened 4 years ago

GangLiTarheel commented 4 years ago

Hi, I am trying to follow the tutorial to train the DeepHiC model but met the following error:

python data_generate.py -hr 10kb -lr 40kb -s all -chunk 40 -stride 40 -bound 201 -scale 1 -c GM12878_primary usage: data_generate.py -c CELL_LINE -hr {5kb,10kb,25kb,50kb,100kb,250kb,500kb,1mb} -lr LOW_RES -lrc LR_CUTOFF [-s {all,train,valid}] -chunk CHUNK -stride STRIDE -bound BOUND -scale SCALE [-type {max,avg}] [--help] data_generate.py: error: the following arguments are required: -lrc

Could you provide your default lrc parameter? Thanks ahead! Gang

omegahh commented 4 years ago

Hello, Sorry for forgetting to update the README file. For Rao's Hi-C, we used 100 for 1/16 downsampled data, 80 for 1/25 downsampled data, 50 for 1/50 downsampled data and 25 for 1/100 downsampled data.

Thanks for your feedback!

GangLiTarheel commented 4 years ago

Thanks for your quick response and the clarification! Gang