omegahh
commented
1 year ago Hello, Sorry for such a long time no-replying. DeepHiC uses processed Hi-C matrices data as input, not raw unaligned .fastq files
Open ZQY19960810 opened 2 years ago
omegahh
commented
1 year ago Hello, Sorry for such a long time no-replying. DeepHiC uses processed Hi-C matrices data as input, not raw unaligned .fastq files
Hi author: I changed my all_parser.py ccording to your instructions: root_dir = '/home/name/Hi-C/deephic' then I put my unzip HiCdata in /home/name/Hi-C/deephic/raw/SAMEA103989648 SAMEA103989648_1.fastq SAMEA103989648_2.fastq and I run python data_aread.py -c SAMEA103989648 I got error : _Start reading data, there are 0 files (10kb). Output directory: /home/zhaoqianyi/Hi-C/deephic/mat/SAMEA103989648 Start a multiprocess pool with processnum=23 for reading raw data All reading processes done. Running cost is 0.0 min. I want to know should I use 23 nodes to solve this issue ? looking forward to your answer thanks