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omerwe / polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)
MIT License
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Connection timed out #137

Closed wuyangf7 closed 2 years ago

wuyangf7 commented 2 years ago

Hi,

I was running the fine-mapping jobs submitted based on create_finemapper_jobs.py. However, I found some jobs return the error message that "raise URLError(err); urllib.error.URLError: <urlopen error [Errno 110] Connection timed out". I think this is relevant to the online input file after the --ld linked to the LD reference. The error is pretty random. Is there a way that I can avoid such Errors?

Yang

omerwe commented 2 years ago

If it happens randomly then it's probably just internet connection issues at your institution... I'm afraid there's nothing I can do to help. Perhaps try speaking with your IT department?

You can try downloading the LD files manually and use them as if they were cached (please see the wiki file for details).