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omerwe / polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)
MIT License
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LD matrix snps #169

Closed gbloeb closed 1 year ago

gbloeb commented 1 year ago

What were your filters for choosing the UKB snps to include the LD score matrices that you provide? I was surprised to see that many of the included variants have MAF<0.1%.

omerwe commented 1 year ago

We used the MAF field in the UKBB mfi files (included with the imputed SNPs).