There appear to be 1 leaked semaphore objects to clean up at shutdown warnings.warn('resource_tracker: There appear to be %d '

omerwe / polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

MIT License

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There appear to be 1 leaked semaphore objects to clean up at shutdown warnings.warn('resource_tracker: There appear to be %d ' #170

Closed gustavahlberg closed 10 months ago

gustavahlberg commented 10 months ago

Hi, I keep getting this error before it finemapper.py shuts down Killed: 9 /Users/gustavahlberg/anaconda3/lib/python3.11/multiprocessing/resource_tracker.py:224: UserWarning: resource_tracker: There appear to be 1 leaked semaphore objects to clean up at shutdown warnings.warn('resource_tracker: There appear to be %d '

omerwe commented 10 months ago

@gustavahlberg I'm not sure why this happens. Does this happen also when running the demo examples (as shown in the wiki) or only your own data? Also, does Polyfun create any output files before this happens? I suspect this might be related to insufficient memory, though I can't really know without more context...

omerwe commented 10 months ago

@gustavahlberg are there any updates?

omerwe commented 10 months ago

Closing the issue for now, please reopen if you have any updates. Thanks!