Closed qiyanghong2020 closed 10 months ago
UKBB released all their plink and bgen files in hg19, hence all of our files also use hg19. You can use a tool likfe LiftOver to convert your coordinates to hg19. Sorry I can't help more...
Thanks, definitely!
I am using a GWAS file coordinated in genome coordinates (hg38), but it seems that extract_snpvar.py and snpvar_meta.chr1_7.parquet can only accept coordinates in hg19. Could you provide me with 'snpvar_meta.chr1_7.parquet' and 'snpvar_meta.chr8_22.parquet' files based on hg38?