Locus has no credible set

omerwe / polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

MIT License

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Locus has no credible set #177

Closed AI-10 closed 8 months ago

AI-10 commented 8 months ago

hi !

I'm executing polufun+susie on some regions of 500kb size, but I noticed one locus has no credible set in it? In addition, I found some credible sets with cumulative PIPs below 95% Are these results plausible?

omerwe commented 8 months ago

Yes, it's possible, because SuSiE uses a different definition of 95% credible set than previous definition. Please see the Supplementary information of the PolyFun paper for details (specifically the lines 2-4 in the section titled "Secondary analyses of PolyFun simulation studies").