Closed kkupkova closed 8 months ago
Hi,
I wanted to use your generated LD matrices but I am running into problems with few of the files. The regions below seem to have only .gz file, but the .npz file.
chr6_26000001_29000001 chr6_27000001_30000001 chr6_31000001_34000001 chr6_32000001_35000001 chr8_8000001_11000001 chr8_9000001_12000001 chr11_47000001_50000001 chr11_48000001_51000001 chr11_49000001_52000001 chr11_50000001_53000001
--2023-12-08 16:27:00-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr11_47000001_50000001.gz Resolving broad-alkesgroup-ukbb-ld.s3.amazonaws.com (broad-alkesgroup-ukbb-ld.s3.amazonaws.com)... 54.231.132.9, 16.182.74.217, 3.5.20.10, ... Connecting to broad-alkesgroup-ukbb-ld.s3.amazonaws.com (broad-alkesgroup-ukbb-ld.s3.amazonaws.com)|54.231.132.9|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 205659 (201K) [binary/octet-stream] Saving to: ‘chr11_47000001_50000001.gz.1’ 100%[========================================================================================================================>] 205,659 --.-K/s in 0.09s 2023-12-08 16:27:00 (2.14 MB/s) - ‘chr11_47000001_50000001.gz.1’ saved [205659/205659] --2023-12-08 16:27:00-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr11_47000001_50000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:00 ERROR 404: Not Found. --2023-12-08 16:27:00-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr11_48000001_51000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 221785 (217K) [binary/octet-stream] Saving to: ‘chr11_48000001_51000001.gz.1’ 100%[========================================================================================================================>] 221,785 --.-K/s in 0.03s 2023-12-08 16:27:00 (7.03 MB/s) - ‘chr11_48000001_51000001.gz.1’ saved [221785/221785] --2023-12-08 16:27:00-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr11_48000001_51000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:01 ERROR 404: Not Found. --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr11_49000001_52000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 184853 (181K) [binary/octet-stream] Saving to: ‘chr11_49000001_52000001.gz.1’ 100%[========================================================================================================================>] 184,853 --.-K/s in 0.01s 2023-12-08 16:27:01 (12.8 MB/s) - ‘chr11_49000001_52000001.gz.1’ saved [184853/184853] --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr11_49000001_52000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:01 ERROR 404: Not Found. --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr11_50000001_53000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 121584 (119K) [binary/octet-stream] Saving to: ‘chr11_50000001_53000001.gz.1’ 100%[========================================================================================================================>] 121,584 --.-K/s in 0.001s 2023-12-08 16:27:01 (141 MB/s) - ‘chr11_50000001_53000001.gz.1’ saved [121584/121584] --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr11_50000001_53000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:01 ERROR 404: Not Found. --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr6_26000001_29000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 188489 (184K) [binary/octet-stream] Saving to: ‘chr6_26000001_29000001.gz.1’ 100%[========================================================================================================================>] 188,489 --.-K/s in 0.004s 2023-12-08 16:27:01 (51.1 MB/s) - ‘chr6_26000001_29000001.gz.1’ saved [188489/188489] --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr6_26000001_29000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:01 ERROR 404: Not Found. --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr6_27000001_30000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 252354 (246K) [binary/octet-stream] Saving to: ‘chr6_27000001_30000001.gz.1’ 100%[========================================================================================================================>] 252,354 --.-K/s in 0.006s 2023-12-08 16:27:01 (40.9 MB/s) - ‘chr6_27000001_30000001.gz.1’ saved [252354/252354] --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr6_27000001_30000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:01 ERROR 404: Not Found. --2023-12-08 16:27:01-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr6_31000001_34000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 437289 (427K) [binary/octet-stream] Saving to: ‘chr6_31000001_34000001.gz.1’ 100%[========================================================================================================================>] 437,289 --.-K/s in 0.03s 2023-12-08 16:27:02 (13.3 MB/s) - ‘chr6_31000001_34000001.gz.1’ saved [437289/437289] --2023-12-08 16:27:02-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr6_31000001_34000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:02 ERROR 404: Not Found. --2023-12-08 16:27:02-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr6_32000001_35000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 368786 (360K) [binary/octet-stream] Saving to: ‘chr6_32000001_35000001.gz.1’ 100%[========================================================================================================================>] 368,786 --.-K/s in 0.03s 2023-12-08 16:27:02 (11.3 MB/s) - ‘chr6_32000001_35000001.gz.1’ saved [368786/368786] --2023-12-08 16:27:02-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr6_32000001_35000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:02 ERROR 404: Not Found. --2023-12-08 16:27:02-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr8_8000001_11000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 258058 (252K) [binary/octet-stream] Saving to: ‘chr8_8000001_11000001.gz.1’ 100%[========================================================================================================================>] 258,058 --.-K/s in 0.007s 2023-12-08 16:27:02 (34.6 MB/s) - ‘chr8_8000001_11000001.gz.1’ saved [258058/258058] --2023-12-08 16:27:02-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr8_8000001_11000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:02 ERROR 404: Not Found. --2023-12-08 16:27:02-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr8_9000001_12000001.gz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 200 OK Length: 261771 (256K) [binary/octet-stream] Saving to: ‘chr8_9000001_12000001.gz.1’ 100%[========================================================================================================================>] 261,771 --.-K/s in 0.02s 2023-12-08 16:27:02 (16.1 MB/s) - ‘chr8_9000001_12000001.gz.1’ saved [261771/261771] --2023-12-08 16:27:02-- https://broad-alkesgroup-ukbb-ld.s3.amazonaws.com/UKBB_LD/chr8_9000001_12000001.npz Reusing existing connection to broad-alkesgroup-ukbb-ld.s3.amazonaws.com:443. HTTP request sent, awaiting response... 404 Not Found 2023-12-08 16:27:02 ERROR 404: Not Found.
Please see the question about missing files in the FAQ
Hi,
I wanted to use your generated LD matrices but I am running into problems with few of the files. The regions below seem to have only .gz file, but the .npz file.
chr6_26000001_29000001 chr6_27000001_30000001 chr6_31000001_34000001 chr6_32000001_35000001 chr8_8000001_11000001 chr8_9000001_12000001 chr11_47000001_50000001 chr11_48000001_51000001 chr11_49000001_52000001 chr11_50000001_53000001