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omerwe / polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)
MIT License
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MAF #47

Closed hchcwwwww closed 3 years ago

hchcwwwww commented 3 years ago

My schizophrenia summary data does not have a MAF column. Can I simply set the MAF to 0?Is that going to make a big difference

omerwe commented 3 years ago

You could set MAF=0.5 for all SNPs, and it won't make a big difference. However, if your sumstats include rare SNPs, I suggest that you remove them first.