Closed jdblischak closed 3 years ago
It can be useful to save the FINEMAP output files for later inspection. This PR adds the flag --finemap-dir to specify the output directory instead of using a temporary one.
--finemap-dir
Example usage:
python finemapper.py \ --geno example_data/chr1 \ --sumstats example_data/chr1.finemap_sumstats.txt.gz \ --n 383290 \ --chr 1 \ --start 46000001 \ --end 49000001 \ --method finemap \ --finemap-exe <path to FINEMAP v1.4 executable> \ --max-num-causal 5 \ --cache-dir LD_cache \ --out output/finemap.finemap_exe.1.46000001.49000001.gz \ --finemap-dir output/finemap.finemap_exe.1.46000001.49000001
This is awesome, thanks!
It can be useful to save the FINEMAP output files for later inspection. This PR adds the flag
--finemap-dir
to specify the output directory instead of using a temporary one.Example usage: