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omgenomics / bio-data-zoo

Example genomics data for tool developers
MIT License
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Add fasta/q files with long IDs #4

Closed audy closed 2 months ago

audy commented 2 months ago

This is something that I have encountered in the wild. They are valid files AFAIK but they can lead to samtools breaking (e.g., minimap2 ... long-ids.fastq | samtools).

robertaboukhalil commented 2 months ago

Thanks @audy, this is great, I did not know that read names were limited to 254 characters!

robertaboukhalil commented 2 months ago

Added it in https://github.com/omgenomics/bio-data-zoo/commit/f23be65c2d21110113d275b8364388c458e395c4, thanks again!