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omicsCore / SEQprocess

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
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Hg19 vs HG 38 #3

Open Gster963 opened 4 years ago

Gster963 commented 4 years ago

I am very interested in using your platform to analyze WES data. The gatk website recommends using Hg19/b37 for WES but HG38. I noticed your reference database is for hg38? will the script work with HG19 as reference data? Do you recommend using hg 38 anyways?

Thanks

jiheahihi commented 4 years ago

Hi. SEQprocess was configured with the latest released reference genome (hg38). You can run SEQprocess with hg19 by editing the config file. However, you should be aware that hg19 / b37 is an old version released 10 years ago.

Thanks