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omnia-md / omnia-linux-anvil

Experimental version of conda-forge/linux-anvil to build openmm
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Changes to docker image #2

Closed mpharrigan closed 7 years ago

mpharrigan commented 7 years ago

Note: something is wrong with the texlive installation. It is completely baffling that the centos package manager doesn't let you install a working tex installation

mpharrigan commented 7 years ago 
Running LaTeX files through pdflatex...
This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./OpenMMUsersGuide.tex
LaTeX2e <2016/03/31> patch level 3
Babel <3.9r> and hyphenation patterns for 3 language(s) loaded.
(./sphinxmanual.cls
Document Class: sphinxmanual 2016/10/12 v1.5 Document class (Sphinx manual)
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/report.cls
Document Class: report 2014/09/29 v1.4h Standard LaTeX document class
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/size10.clo)))
(/usr/local/texlive/2015/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/local/texlive/2015/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/local/texlive/2015/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/local/texlive/2015/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/local/texlive/2015/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/inputenc.sty
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/utf8.def
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/omsenc.dfu)))
(/usr/local/texlive/2015/texmf-dist/tex/latex/cmap/cmap.sty)
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/fontenc.sty
(/usr/local/texlive/2015/texmf-dist/tex/latex/base/t1enc.def)<<t1.cmap>>)
(/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/local/texlive/2015/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/local/texlive/2015/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/local/texlive/2015/texmf-dist/tex/generic/babel/babel.sty
(/usr/local/texlive/2015/texmf-dist/tex/generic/babel-english/english.ldf
(/usr/local/texlive/2015/texmf-dist/tex/generic/babel/babel.def)))
(/usr/local/texlive/2015/texmf-dist/tex/latex/psnfss/times.sty)

! LaTeX Error: File `fncychap.sty' not found.
rmcgibbo commented 7 years ago

tlmgr install...

On Fri, Jan 20, 2017 at 2:19 PM, Matthew Harrigan notifications@github.com wrote:

Running LaTeX files through pdflatex... This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./OpenMMUsersGuide.tex LaTeX2e <2016/03/31> patch level 3 Babel <3.9r> and hyphenation patterns for 3 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2016/10/12 v1.5 Document class (Sphinx manual) (/usr/local/texlive/2015/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/local/texlive/2015/texmf-dist/tex/latex/base/size10.clo))) (/usr/local/texlive/2015/texmf-dist/tex/latex/geometry/geometry.sty (/usr/local/texlive/2015/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/local/texlive/2015/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/local/texlive/2015/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/local/texlive/2015/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/local/texlive/2015/texmf-dist/tex/latex/base/inputenc.sty (/usr/local/texlive/2015/texmf-dist/tex/latex/base/utf8.def (/usr/local/texlive/2015/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/local/texlive/2015/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/local/texlive/2015/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/local/texlive/2015/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/local/texlive/2015/texmf-dist/tex/latex/base/fontenc.sty (/usr/local/texlive/2015/texmf-dist/tex/latex/base/t1enc.def)<<t1.cmap>>) (/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/local/texlive/2015/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/local/texlive/2015/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/local/texlive/2015/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/local/texlive/2015/texmf-dist/tex/generic/babel/babel.sty (/usr/local/texlive/2015/texmf-dist/tex/generic/babel-english/english.ldf (/usr/local/texlive/2015/texmf-dist/tex/generic/babel/babel.def))) (/usr/local/texlive/2015/texmf-dist/tex/latex/psnfss/times.sty)

! LaTeX Error: File `fncychap.sty' not found.

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jchodera commented 7 years ago

These lines might help.

Lnaden commented 7 years ago

Im closing this as we have brought most of these changes in from another PR

mpharrigan commented 7 years ago

Thanks @Lnaden !