omnideconv / deconvBench

Comparison of 2nd generation deconvolution methods implemented in omnideconv
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Test datasets #2

Closed grst closed 9 months ago

grst commented 3 years ago

See also https://github.com/PelzKo/omnideconv/issues/4 and https://github.com/alex-d13/simulator/issues/1

grst commented 3 years ago

Recently published in BiB: Nadel et al.

A total of 12 of these represent in vitro synthetic mixtures and 300 represent in silico synthetic mixtures prepared using single-cell data. A final 3728 clinical samples have been collected from the Framingham cohort, for which cell populations have been quantified using electrical impedance cell counting.

Data available from github.

grst commented 2 years ago

For the benchmark:

More interesting/challenging tissues that can be interesting down-the-road: