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omnideconv / immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
https://omnideconv.org/immunedeconv/index.html
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Error in deconvolute_cibersort #60

Closed huangwb8 closed 3 years ago

huangwb8 commented 3 years ago

When running deconvolute_cibersort, some errors appear:

assertion failed: CIBERSORT.R is provided
error: exists("cibersort_binary", envir = config_env) is not TRUE

It seems that there is no function cibersort_binary loaded. Could you please repair this bug? Thanks!

grst commented 3 years ago

Hi @huangwb8,

you'll need to provide the path to the CIBERSORT.R file as specified here: https://icbi-lab.github.io/immunedeconv/articles/immunedeconv.html#special-case-cibersort

huangwb8 commented 3 years ago

Thanks! I got it!