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omnideconv / immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

https://omnideconv.org/immunedeconv/index.html

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Open grst opened 3 years ago

grst commented 3 years ago

Some questions keep popping up, it would be good to collect them and add them to an FAQ for further reference.

[ ] Interpretation of scores for the different methods
[ ] Direct access to specific parameters of the underlying methods (stuff that isn't abstracted into deconvolute)
[ ] Recommended normalization/preprocessing of input data (RNA-seq and arrays)

grst commented 2 years ago

These issues would also make sense in the context of omnideconv. Maybe we can make a central FAQ in the omnideconv website and link to there.