When using the seurat_to_spatialexperiment it automatically adapts the nomenclature used in seurat - for instance the spatialCoords dataframe gets the names used in seurat (imagerow & imagecol), however it seems like functions like plot_celltype are dependent on this nomenclature: "pxl_col_in_fullres","pxl_row_in_fullres".
Hi devs,
I have encountered a rather small "bug":
When using the seurat_to_spatialexperiment it automatically adapts the nomenclature used in seurat - for instance the spatialCoords dataframe gets the names used in seurat (imagerow & imagecol), however it seems like functions like plot_celltype are dependent on this nomenclature: "pxl_col_in_fullres","pxl_row_in_fullres".
Best, Peter