Import existing OMOP db into omop-on-fhir

[bwalsh]

Thanks for a great product.

The use case we are trying to implement is: "As an OMOP user, in order to use FHIR, I'd like to import my existing OMOP database into the service."

We would like to import the OMOP reference implementation found in sqlite here: https://github.com/OHDSI/Eunomia/blob/main/inst/sqlite/cdm.tar.xz

So far we have:

• successfully setup the omonfhir using docker.
• confirmed we can read and write simple resources as FHIR
• loaded the eunomia database into postgres, in its own database

However, it is not clear that there is a mechanism to load the omop-on-fhir server's omop database with imported omop records?

@lbeckman314

[myungchoi]

Please see the following repo to get some information about what additional tables and views need to be created for OMOP on FHIR. These are to support names, some FHIR to OMOP mappings.

https://github.com/omoponfhir/omopv5_4_setup