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oncogenetics
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LocusExplorer
An interactive graphical illustration of genetic associations and their biological context
MIT License
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15
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Branch named master
#117
rachelicr
closed
8 months ago
0
Added dockerfile for shiny-proxy hosting
#116
rachelicr
closed
8 months ago
0
Add option of reference genome builds GRCh38/hg38
#115
zx8754
opened
1 year ago
0
Update server.R
#114
guanguiwensy
closed
8 months ago
0
Update ui.R
#113
guanguiwensy
closed
8 months ago
0
Data download button
#112
zx8754
opened
6 years ago
0
v0.7.1, fix 108, fix 104, fix 107, fix 103, fix 102, fix 99, fix 110
#111
zx8754
closed
6 years ago
0
Add 8q24 data
#110
zx8754
closed
6 years ago
0
LD tutorial - Error: Duplicate ID '.'
#109
zx8754
closed
4 years ago
3
Rename chr23 files to chrX
#108
zx8754
closed
6 years ago
0
Make LD file options outputs HTML file
#107
dhanaprakashj
closed
6 years ago
1
Caption for each prostate cancer region
#106
zx8754
closed
4 years ago
1
Add landing page index.html
#105
zx8754
closed
4 years ago
1
Move Archive folder into Data>iCOGs
#104
zx8754
closed
6 years ago
0
Update readme: Required Software
#103
zx8754
closed
6 years ago
0
Update sessionInfo md
#102
zx8754
closed
6 years ago
0
Add more explanation text for each page, plot, options
#101
zx8754
opened
6 years ago
0
Add tutorial
#100
zx8754
opened
6 years ago
0
Manhattan: PostProbs, add BF to SNP names
#99
zx8754
closed
6 years ago
0
Dev
#98
zx8754
closed
6 years ago
0
bedgraph, custom annotation file input
#97
zx8754
opened
6 years ago
0
Smooth the odds ratio
#96
zx8754
closed
6 years ago
1
Gene names, make url to UCSC, NCBI, GeneCards, etc
#95
zx8754
closed
6 years ago
1
Gene track - do not plot transcripts if not matched with geneSymbol
#94
zx8754
closed
7 years ago
0
Accept zipped input files
#93
zx8754
closed
4 years ago
1
Increase file upload limit
#92
zx8754
closed
7 years ago
1
Change zooming function
#91
zx8754
closed
6 years ago
1
data.table = FALSE
#90
zx8754
closed
4 years ago
0
Use global.R for global variables.
#89
zx8754
closed
7 years ago
0
No need for check if inFile is NULL, use req() instead
#88
zx8754
closed
6 years ago
1
R3.12 Help boxes next to each parameter or element
#87
zx8754
closed
7 years ago
1
R3.11 Handling of uploading custom data if these data are unsupported
#86
zx8754
closed
7 years ago
1
R2.2 UI glitches in website version of the app.
#85
zx8754
closed
7 years ago
0
Allow long sidebars to be scrollable
#84
d4l997
closed
6 years ago
1
For Prostate data use eQTL as bedGraph track title by default
#83
zx8754
closed
8 years ago
1
Suggest second shade in Hex
#82
zx8754
closed
6 years ago
1
Test commit
#81
martimij
closed
9 years ago
0
Final plot title change to chrXX:start-end
#80
martimij
closed
9 years ago
0
Issues with changing the final plot size and resolution
#79
martimij
closed
9 years ago
1
Jpg file (Mac OS 10.10.3) doesn't download correctly
#78
martimij
closed
9 years ago
3
Add measurement unit to "Resolution" slider
#77
martimij
closed
9 years ago
0
Move the "almost there..." message to where the plot is expected
#76
martimij
closed
7 years ago
1
Add "Region Flank" option 0
#75
martimij
closed
9 years ago
0
Set the default "Repulsion force factor" to 20
#74
martimij
closed
9 years ago
0
Stretch the chromosome image to the width of the plot
#73
martimij
closed
7 years ago
1
Gene names in the "Gene" track are too small
#72
martimij
closed
8 years ago
1
Add "custom" to check-boxes for user provided files
#71
martimij
closed
9 years ago
0
Replace ggbio::tracks() with cowplot::plot_grid
#70
zx8754
opened
9 years ago
1
Arbitrarily highlight a SNP
#69
zx8754
closed
6 years ago
1
SNP annotations
#68
zx8754
opened
9 years ago
4
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