Dev

[zx8754]

0c1e57c fix #42, fix #43, fix #44, fix #48, fix #49, fix #50, fix #51, fix #63

ffc4d24 fix #47, fix #52, fix #53, fix #56, fix #57, fix #60, fix #62, fix #62, fix #64, fix #65

Milestone 1

• [x] R1.1 Add suggestiveline and genomewideline | TD: Added sliderInput, red and blue lines.
• [x] R1.2 Color of dots and recomb line is not bright. | TD: Recomb and SNP outline 3 shades darker.
• [x] R1.3 Is it suitable for other species than human? | TD/ES: Human only
• [ ] R1.4 Text on plot not clear, overlapping SNP names duplicate enhancement
• [ ] R1.5 Some mistakes when the format of JPEG changed to TIFF? question

  Milestone 2

• [x] R2.1 Replicate Figure 1 in manuscript question | TD: fixed

  Milestone 3

• [x] R3.1 ERROR: Pre-loaded bio packages cannot be unloaded duplicate error | TD: added note to README.
• [x] R3.2 ERROR filename encoding - Source vs source? | TD: typo "source/" renamed to "Source/"
• [x] R3.3 ERROR bug duplicate | TD: hide red error messages dupe #11
• [x] R3.4 Zoom region range with NA? bug | TD: hide red error messages dupe #11
• [x] R3.5 "Please download Histone bigWig files" message reword. | TD: Referred to FAQ 5.
• [x] R3.6 Final plots: Cannot open the connection bug duplicate | TD: typo "source/" renamed to "Source/"
• [ ] R3.7 Suggested filenames with invalid characters bug
• [ ] R3.8 No (Plot) file is produced after saving question
• [x] R3.9 Error in nrow(plotDatGeneticMap()) duplicate error | TD: hide red error messages dupe #11
• [x] R3.10 Check if custom data is supplied bug duplicate enhancement | TD: hide red error messages dupe #11
• [ ] R3.m1 Plot settings, SNP filter, -log10 p-value enhancement
• [ ] R3.m2 Additional custom tracks duplicate enhancement
• [x] R3.m3 Move make LD tab unter Help tab enhancement | TD: moved under Help
• [ ] R3.m4 Input data, accept any extension, not only *.txt. - OSX issue enhancement
• [x] R3.m5 Width of menu in the help section | TD: changed to dropdown
• [x] R3.m6 BED bedGraph typo error | TD: changed bed to bedGraph
• [x] R3.m7 Colour picker in final plot enhancement
• [x] R3.m8 Minor comments regarding the paper error TD/ES: manuscript updated