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> library(shiny)
> runApp()
Listening on http://127.0.0.1:5268
Attaching package: ‘shinyjs’
The following object is masked from ‘package:shiny’:
runExample
The following object is masked from ‘package:graphics’:
text
The following objects are masked from ‘package:methods’:
removeClass, show
data.table 1.9.6 For help type ?data.table or https://github.com/Rdatatable/data.table/wiki
The fastest way to learn (by data.table authors): https://www.datacamp.com/courses/data-analysis-the-data-table-way
Attaching package: ‘dplyr’
The following objects are masked from ‘package:data.table’:
between, last
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Use suppressPackageStartupMessages to eliminate package startup messages.
Attaching package: ‘DT’
The following objects are masked from ‘package:shiny’:
dataTableOutput, renderDataTable
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:dplyr’:
combine, intersect, setdiff, union
The following object is masked from ‘package:stats’:
xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, as.vector, cbind, colnames, do.call, duplicated, eval, evalq, Filter, Find, get,
intersect, is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position,
rank, rbind, Reduce, rep.int, rownames, sapply, setdiff, sort, table, tapply, union, unique, unlist, unsplit
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
Need specific help about ggbio? try mailing
the maintainer or visit http://tengfei.github.com/ggbio/
Attaching package: ‘ggbio’
The following objects are masked from ‘package:ggplot2’:
geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, xlim
The following object is masked from ‘package:shinyjs’:
reset
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:dplyr’:
rename
Loading required package: IRanges
Attaching package: ‘IRanges’
The following object is masked from ‘package:tidyr’:
expand
The following objects are masked from ‘package:dplyr’:
collapse, desc, slice
The following object is masked from ‘package:data.table’:
shift
Loading required package: GenomeInfoDb
Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: ‘AnnotationDbi’
The following object is masked from ‘package:dplyr’:
select
Loading required package: DBI
Note: the specification for S3 class “AsIs” in package ‘jsonlite’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
*** caught segfault ***
address 0x0, cause 'unknown'
Traceback:
1: .Call("dplyr_filter_impl", PACKAGE = "dplyr", df, dots)
2: filter_impl(.data, dots)
3: filter_.tbl_df(tbl_df(.data), .dots = dots)
4: filter_(tbl_df(.data), .dots = dots)
5: as.data.frame(filter_(tbl_df(.data), .dots = dots))
6: filter_.data.frame(.data, .dots = lazyeval::lazy_dots(...))
7: filter_(.data, .dots = lazyeval::lazy_dots(...))
8: filter(., BP >= zoomStart() & BP <= zoomEnd())
9: function_list[[k]](value)
10: withVisible(function_list[[k]](value))
11: freduce(value, `_function_list`)
12: `_fseq`(`_lhs`)
13: eval(expr, envir, enclos)
14: eval(quote(`_fseq`(`_lhs`)), env, env)
15: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
16: ROIdatGeneticMap() %>% filter(BP >= zoomStart() & BP <= zoomEnd())
17: .func()
18: withCallingHandlers(expr, error = function(e) { handle <- getOption("shiny.error") if (is.function(handle)) handle()})
19: shinyCallingHandlers(.func())
20: doTryCatch(return(expr), name, parentenv, handler)
21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
22: tryCatchList(expr, classes, parentenv, handlers)
23: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
24: try(shinyCallingHandlers(.func()), silent = TRUE)
25: withVisible(try(shinyCallingHandlers(.func()), silent = TRUE))
26: func()
27: withCallingHandlers(expr, error = function(e) { handle <- getOption("shiny.error") if (is.function(handle)) handle()})
28: shinyCallingHandlers(func())
29: env$runWith(self, func)
30: tryCatchList(expr, classes, parentenv, handlers)
31: tryCatch(env$runWith(self, func), finally = .graphExitContext(id))
32: withReactiveDomain(.domain, { env <- .getReactiveEnvironment() .graphEnterContext(id) tryCatch(env$runWith(self, func), finally = .graphExitContext(id))})
33: ctx$run(function() { result <- withVisible(try(shinyCallingHandlers(.func()), silent = TRUE)) .visible <<- result$visible .value <<- result$value})
34: self$.updateValue()
35: plotDatGeneticMap()
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
zx8754
commented
9 years ago
Fatal Error on RStudio
Following Tracback is from RGUI