Blank results for annotation

oncokb / oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

GNU Affero General Public License v3.0

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Blank results for annotation #139

Closed xiw588 closed 2 years ago

xiw588 commented 2 years ago

Hi, I tried to run annotation using the following code, but got the False results for all variants. python MafAnnotator.py -i "OncoKB_test.txt" -o "test_oncoKB.txt" -b token

I am wondering if I did anything wrong

Here I attached the test sample here, and hope you can help me figure this out.

Thank you.

zhx828 commented 2 years ago

@xiw588 sorry about the late response. Not sure why it fall off my radar. I will take a look.

zhx828 commented 2 years ago

@xiw588 could you mind send me the file so I can reproduce the issue easily. Thanks in advance.

zhx828 commented 2 years ago

@xiw588 follow up on this. Are you still seeing the issue? If yes, could you send me a test file to reproduce? Thanks!

zhx828 commented 2 years ago

Gonna close this ticket since I haven't heard back from the user. Will reopen if situation changes.