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oncokb / oncokb-annotator

Annotates variants in MAF with OncoKB annotation.
GNU Affero General Public License v3.0
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Support StructuralVariant annotator #155

Closed zhx828 closed 2 years ago

zhx828 commented 2 years ago

We currently support fusions/intragenic deletion. With the SV about to go priduction in cbioportal, we should support the SV file directly. See slack for the SV file format.

zhx828 commented 2 years ago

SV file does not include whether the variant is functional fusion which is required to be annotated. Reached out to the curation team, they will discuss internally.

zhx828 commented 2 years ago

The SV file generated by the product team only includes functional fusion, so we can assume whoever uses SV file only includes functional fusions as well.