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oncokb / oncokb-annotator

Annotates variants in MAF with OncoKB annotation.
GNU Affero General Public License v3.0
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Support individual CNA file format #162

Closed zhx828 closed 2 years ago

zhx828 commented 2 years ago

This following format will be supported. This fixes https://github.com/oncokb/oncokb-annotator/issues/123

Tumor_Sample_Barcode Hugo_Symbol Copy_Number_Alteration
TCGA-05-4417-01 MET 2
TCGA-05-4417-01 ERBB2 Amplification
zhx828 commented 2 years ago

@jjgao when you get a chance, could you take a look the following?