I'm running MafAnnotator using a shell script and when including the clinical data file in the argument, I'm getting the below error:
Below is my shell script:
I'm unsure what the issue is here; the CSV is written with R. I checked the AnnotatorCore.py file and it looks like read.csv was being called treating the clinical file as tab-delimited, so I changed my CSV to tab-delimited and saved it with .txt extension as you can see in the shell script, and I'm still getting the same error. I'm fairly certain the csv/txt file is encoded as UTF-8, as far as I can tell. Any help would be appreciated.
Hi,
I'm running MafAnnotator using a shell script and when including the clinical data file in the argument, I'm getting the below error:
Below is my shell script:
I'm unsure what the issue is here; the CSV is written with R. I checked the AnnotatorCore.py file and it looks like read.csv was being called treating the clinical file as tab-delimited, so I changed my CSV to tab-delimited and saved it with .txt extension as you can see in the shell script, and I'm still getting the same error. I'm fairly certain the csv/txt file is encoded as UTF-8, as far as I can tell. Any help would be appreciated.