issues
search
onecodex
/
needletail
Fast FASTX parsing and k-mer methods in Rust
MIT License
174
stars
20
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
New version in crates.io
#85
tmaklin
opened
16 hours ago
1
Need a wheel for 3.12
#84
Thernn88
closed
8 hours ago
1
Build wheels on Github Actions
#83
audy
closed
3 weeks ago
0
include the tests in the crate
#82
mr-c
closed
3 weeks ago
0
Tests are missing from crate
#81
mr-c
closed
3 weeks ago
2
release version for mac os on PyPI?
#80
arogozhnikov
closed
8 hours ago
1
Integrate "Honor individual compression features" into a release
#79
PB-DB
closed
8 hours ago
1
Migrate xz2 to liblzma
#78
jguhlin
closed
5 months ago
3
Honor individual compression features
#77
jguhlin
closed
7 months ago
1
Fix typos
#76
mo8it
opened
8 months ago
0
Clippy
#75
mo8it
closed
8 months ago
0
Avoid unneeded allocations in tests
#74
mo8it
closed
8 months ago
0
Update deps
#73
mo8it
closed
8 months ago
0
Profile-Guided Optimization (PGO) benchmark results
#72
zamazan4ik
opened
8 months ago
2
Support for zstd
#71
mbhall88
opened
10 months ago
1
I am looking for a function that gives me an iterator over the read SequenceRecord's.
#70
stela2502
opened
1 year ago
2
Add faidx
#69
wjwei-handsome
closed
1 year ago
3
Random access a region in fasta file by `fai` index
#68
wjwei-handsome
opened
1 year ago
4
add `num_gaps` function for record
#67
wjwei-handsome
closed
1 year ago
3
how to retrieve file format(Fasta or Fastq) in Reader?
#66
wjwei-handsome
closed
1 year ago
2
Replace abandoned dep
#65
Keats
closed
1 year ago
0
buf_redux not maintained and unsupported in future version
#64
jianshu93
closed
1 year ago
2
Update deps
#63
Keats
closed
1 year ago
0
parallel parsing a lot of fasta files?
#62
jianshu93
closed
1 year ago
5
How to re-open a fastq.gz file?
#61
stela2502
closed
1 year ago
1
Likely a stupid and easy to answer probem: Support for N characters.
#60
stela2502
closed
2 years ago
3
string compress
#59
jianshu93
opened
2 years ago
1
bit_kmers function will panic at 'attempt to multiply with overflow', if k-mer length is longer than 32 bp.
#58
yiolino
opened
2 years ago
7
Add docs for python
#57
Keats
closed
3 years ago
0
Update deps
#56
Keats
closed
3 years ago
0
writing fastq - writer issues
#55
colindaven
closed
3 years ago
0
just print sequence
#54
colindaven
closed
3 years ago
2
Add license scan report and status
#53
fossabot
closed
3 years ago
1
Add EmptyFile error kind
#52
mbhall88
closed
3 years ago
6
Handling of empty files
#51
mbhall88
closed
3 years ago
2
Tag a release for v0.4.0
#50
mbhall88
closed
4 years ago
1
Use const to generate lookup table in less line
#49
natir
closed
4 years ago
3
Uses a lookup table instead of match to convert nucleotides to 2 bits
#48
natir
closed
4 years ago
6
Fix pyo3 0.11
#47
Keats
closed
4 years ago
4
Drop Seek bound, and add back stdin support and parsing from a Reader
#46
luizirber
closed
4 years ago
5
v0.4 with rewritten parsers + python bindings
#45
Keats
closed
4 years ago
15
Sequence parser callback return type
#44
mbhall88
closed
4 years ago
1
Example for type_callback
#43
mbhall88
closed
4 years ago
5
Fixed broken tests
#42
markhildreth
closed
4 years ago
1
circleci -> gh actions
#41
Keats
closed
4 years ago
0
Add a new iterator to skip "bad" bases without canonicalization
#40
apcamargo
opened
4 years ago
3
Test for invalid fastq with tsv inside
#39
Keats
closed
4 years ago
0
SequenceRecord is not intuitive
#38
bovee
closed
4 years ago
1
Fix compilation without default features, and add CI job to check it
#37
luizirber
closed
4 years ago
5
Do not send misleading errors
#36
Keats
closed
4 years ago
2
Next