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ontoportal-lirmm / ncboproxy

General REST proxy architecture for the seamless extension of APIs based on the NCBO BioPortal technology
Apache License 2.0
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Extension of the OMTD-AgroPortal to NCBO BioPortal and BiblioPortal #3

Open jonquet opened 6 years ago

jonquet commented 6 years ago

This is similar to #1 but for the NCBO BioPortal and BiblioPortal.

NCBO BioPortal: http://services.agroportal.lirmm.fr/ncbobioportal/ontologies?format=omtd-share that will be routed from an address in the biolontology.org name hold by Stanford.

BiblioPortal: http://services.agroportal.lirmm.fr/biblioportal/ontologies?format=omtd-share that will be routed from an address in the ontoportal.org name hold by Stanford.

twktheainur commented 6 years ago

Currently deployed with commit 5e8844d, works on BiblioPortal, but timeout on NCBO BioPortal when trying to retrieve the metadata on /ontologies

jonquet commented 6 years ago

Working examples:

jonquet commented 6 years ago

Now we need to implement the re-routing from bioontology.org and ontoportal.org respectively with @alexskr and @graybeal .

For consistency with other URLs, I would suggest the following URLs: http://services.bioportal.bioontology.org/ontologies?format=omtd-share http://services.bioportal.bioontology.org/ontologies/MESH/?format=omtd-share and http://services.biblioportal.ontoportal.org/ontologies?format=omtd-share http://services.biblioportal.ontoportal.org/ontologies/BIBFRAME/?format=omtd-share

I also need to discuss the NCBO BioPortal timeout issue with @graybeal.

jonquet commented 6 years ago

Time out issue reported to NCBO : https://github.com/ncbo/ontologies_api/issues/44