open-ephys / plugin-GUI

Software for processing, recording, and visualizing multichannel electrophysiology data
https://open-ephys.org/gui
GNU General Public License v3.0
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Open Ephys recording files losing the sample rate information #619

Open salinvia-bp opened 3 months ago

salinvia-bp commented 3 months ago

Hi,

We recently have problems opening our recorded .continuous files using Matlab after the version update. According to Matlab, the sample rate is not in the file (whether at the header or the content):

Screenshot 2024-07-10 at 3 13 36 PM

Here are the settings on the acquisition panel: IMG_3098 Large IMG_3100 Large IMG_3102 Large

Please share your experiences of encountering similar situations and ways to work around this problem.

Many thanks.

medengineer commented 3 months ago

Hi,

Can you post the contents of the structure.openephys for the recording with the missing sample rate data?

Which version did you upgrade from and to?

salinvia-bp commented 3 months ago

Hi ,

Thanks for reaching out.

Here's the contents of the structure.openephys for the specific recording: format: 'Open Ephys Data Format' version: 0.6000 header_bytes: 1024 description: 'each record contains one 64-bit timestamp, one 16-bit sample count (N), 1 uint16 recordingNumber, N 16-bit samples, and one 10-byte record marker (0 1 2 3 4 5 6 7 8 255)' date_created: '08-Jul-2024 21:23:17' channel: 'CH10' channelType: 'Continuous' blockLength: 1024 bitVolts: 0.1950

We are currently using the v0.6.6 software currently. We'll get back to you once we have the older version information examined.

Many thanks, Lei


From: medengineer @.> Sent: Wednesday, July 10, 2024 3:41 PM To: open-ephys/plugin-GUI @.> Cc: Lei Peng @.>; Author @.> Subject: Re: [open-ephys/plugin-GUI] Open Ephys recording files losing the sample rate information (Issue #619)

Hi,

Can you post the contents of the structure.openephys for the recording with the missing sample rate data?

Which version did you upgrade from and to?

— Reply to this email directly, view it on GitHubhttps://github.com/open-ephys/plugin-GUI/issues/619#issuecomment-2221647995, or unsubscribehttps://github.com/notifications/unsubscribe-auth/BJZEWZ755KQRA4X2ZFJRDRTZLW2DFAVCNFSM6AAAAABKVZLNOWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDEMRRGY2DOOJZGU. You are receiving this because you authored the thread.Message ID: @.***>

medengineer commented 3 months ago

Thanks for this information. The sampleRate missing issue was fixed in OpenEphysDataFormat v0.6.2-API8 which should be the latest available for install in the GUI. Can you confirm you have OpenEphysDataFormat v0.6.2-API8 installed via the Plugin Installer (File -> Plugin Installer).

Screenshot 2024-07-11 at 11 37 23 AM