update from bioagent to presto

super-dainiu commented 2 weeks ago

Summary by CodeRabbit

New Features
- Rebranded the project as "PRESTO" with a focus on pretraining and finetuning large language models for synthetic chemistry tasks.
- Updated README with detailed instructions for installation, pretraining stages, downstream tasks, evaluation, model serving, and dataset preparation.
Documentation
- Updated project documentation to reflect the rebranding and provide detailed usage instructions.

coderabbitai[bot] commented 2 weeks ago

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Review failed

The pull request is closed.

Walkthrough

The project underwent a rebranding to "PRESTO," emphasizing pretraining large language models for synthetic chemistry tasks. Import statements were updated across scripts, switching from bioagent to presto for constants and chemistry tools. The README now provides comprehensive guidelines for installation, pretraining, evaluation, and more, enhancing usability.

Changes

Files	Change Summaries
`molecule_build_catalyst_prediction.py` `molecule_build_reagent_prediction.py` `molecule_build_reagent_prediction_molins.py` `molecule_build_solvent_prediction.py` `build_reagent_selection.py`	Constants and chemistry tool imports shifted from `bioagent` to `presto`. Removal of `tokenizer` initialization.
`molecule_build_retrosynthesis_molins.py` `molecule_build_retrosynthesis_smol.py` `build_yield_prediction.py`	Import statements updated from `bioagent` to `presto` for modules related to chemistry tools.
`evaluate_model.py` `serve_model.py` `train_model.py`	Changed import paths from `bioagent` to `presto` for various modules.
`setup.py`	Package name changed from "bioagent" to "presto"

Poem

In the world of code, changes unfold,
From bioagents to presto, a tale retold.
Chemically weaving a language model's dance,
PRESTO rises, enhancing synthetic romance.
Instructions clear, like a rabbit's prance,
Empowering users with a new coding stance. 🐰✨

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super-dainiu commented 2 weeks ago

@coderabbitai full review

coderabbitai[bot] commented 2 weeks ago

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open-mol / bioagent