Closed darrylabbate closed 1 year ago
It's intentional. For two processes, we default to --map-by core --bind-to core
. If you override the binding to be by socket, then this will error out as the socket layer is above that of the core. It confuses the accounting system, which is required to track which cores are actually occupied. If you want to bind to the socket, then you need to map by at least the socket level.
FWIW, I'm not ruling out the possibility of restoring the ability to "bind upward" from where you map. I had to revise the mapping accounting system to support detailed management of cores and threads. One consequence of that was the revised binding rule.
I think there is a way around that rule, but it would take some effort to do and to fully debug all the unintended consequences of the change. For now, that's outside the time available to me, so it is "work for a rainy day" at some future point.
BTW: you can recover the OMPI v4.x behavior by simply adding --map-by slot
to your mpirun
cmd line
BTW: you can recover the OMPI v4.x behavior by simply adding
--map-by slot
to yourmpirun
cmd line
That doesn't seem to work in conjunction with --bind-to socket
[ec2-user@c7g-st-n64-1 ~]$ ~/.local/bin/mpirun --report-bindings -n 2 --bind-to socket --map-by slot hostname
--------------------------------------------------------------------------
While computing bindings, we found no available cpus on
the following node:
Node: c7g-st-n64-1
Please check your allocation.
--------------------------------------------------------------------------
--map-by slot
on its own still binds both processes to their own core
[ec2-user@c7g-st-n64-1 ~]$ ~/.local/bin/mpirun --report-bindings -n 2 --map-by slot hostname
[c7g-st-n64-1:59837] Rank 0 bound to package[0][core:0]
[c7g-st-n64-1:59837] Rank 1 bound to package[0][core:1]
c7g-st-n64-1
c7g-st-n64-1
I tried --map-by socket
on its own and it seems to work similarly to 4.1.x, but the binding output indicates each process is bound differently
[ec2-user@c7g-st-n64-1 ~]$ ~/.local/bin/mpirun --report-bindings -n 2 --map-by socket hostname
[c7g-st-n64-1:59953] Rank 0 bound to package[0][core:0-63]
[c7g-st-n64-1:59953] Rank 1 is not bound (or bound to all available processors)
c7g-st-n64-1
c7g-st-n64-1
Oh - this is the oddball Amazon topology again. I fixed the map/bind problem for it, but it isn't in OMPI main or OMPI v5 yet. If you are using the main branch, you can go to 3rd-party/prrte, checkout the master branch and do a git pull
to obtain the changes. Probably need to do the same for the 3rd-party/openpmix submodule.
Hmm, I pulled the latest commits for both openpmix and prrte, but the above commands all yield the same output
--map-by slot:oversubscribe
on its own works, but you may as well use --oversubscribe
in this case
[ec2-user@c7g-st-n64-1 prrte]$ ~/.local/bin/mpirun --report-bindings -n 2 --map-by slot:oversubscribe hostname
[c7g-st-n64-1:55403] Rank 0 is not bound (or bound to all available processors)
[c7g-st-n64-1:55403] Rank 1 is not bound (or bound to all available processors)
c7g-st-n64-1
c7g-st-n64-1
Side note: I did find a segmentation fault playing around with some of the options:
[ec2-user@c7g-st-n64-1 prrte]$ ~/.local/bin/mpirun --report-bindings -n 2 --bind-to socket --map-by ppr:2 hostname
Segmentation fault
Odd - works fine for me. Can you provide your topology (the xml output from lstopo)? Maybe this is yet another oddball one.
Sure
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE topology SYSTEM "hwloc.dtd">
<topology>
<object type="Machine" os_index="0" cpuset="0xffffffff,0xffffffff" complete_cpuset="0xffffffff,0xffffffff" online_cpuset="0xffffffff,0xffffffff" allowed_cpuset="0xffffffff,0xffffffff" local_memory="132659404800">
<page_type size="4096" count="28782558"/>
<page_type size="65536" count="0"/>
<page_type size="2097152" count="7041"/>
<page_type size="33554432" count="0"/>
<page_type size="1073741824" count="0"/>
<info name="DMIProductName" value="c7g.16xlarge"/>
<info name="DMIProductVersion" value=""/>
<info name="DMIBoardVendor" value="Amazon EC2"/>
<info name="DMIBoardName" value=""/>
<info name="DMIBoardVersion" value=""/>
<info name="DMIChassisVendor" value="Amazon EC2"/>
<info name="DMIChassisType" value="1"/>
<info name="DMIChassisVersion" value=""/>
<info name="DMIChassisAssetTag" value="Amazon EC2"/>
<info name="DMIBIOSVendor" value="Amazon EC2"/>
<info name="DMIBIOSVersion" value="1.0"/>
<info name="DMIBIOSDate" value="11/1/2018"/>
<info name="DMISysVendor" value="Amazon EC2"/>
<info name="Backend" value="Linux"/>
<info name="LinuxCgroup" value="/"/>
<info name="OSName" value="Linux"/>
<info name="OSRelease" value="5.10.165-143.735.amzn2.aarch64"/>
<info name="OSVersion" value="#1 SMP Wed Jan 25 03:13:36 UTC 2023"/>
<info name="HostName" value="c7g-st-n64-1"/>
<info name="Architecture" value="aarch64"/>
<info name="hwlocVersion" value="1.11.8"/>
<info name="ProcessName" value="lstopo"/>
<object type="Package" os_index="60" cpuset="0xffffffff,0xffffffff" complete_cpuset="0xffffffff,0xffffffff" online_cpuset="0xffffffff,0xffffffff" allowed_cpuset="0xffffffff,0xffffffff">
<object type="Cache" cpuset="0xffffffff,0xffffffff" complete_cpuset="0xffffffff,0xffffffff" online_cpuset="0xffffffff,0xffffffff" allowed_cpuset="0xffffffff,0xffffffff" cache_size="33554432" depth="3" cache_linesize="64" cache_associativity="16" cache_type="0">
<object type="Cache" cpuset="0x00000001" complete_cpuset="0x00000001" online_cpuset="0x00000001" allowed_cpuset="0x00000001" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000001" complete_cpuset="0x00000001" online_cpuset="0x00000001" allowed_cpuset="0x00000001" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000001" complete_cpuset="0x00000001" online_cpuset="0x00000001" allowed_cpuset="0x00000001" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="0" cpuset="0x00000001" complete_cpuset="0x00000001" online_cpuset="0x00000001" allowed_cpuset="0x00000001">
<object type="PU" os_index="0" cpuset="0x00000001" complete_cpuset="0x00000001" online_cpuset="0x00000001" allowed_cpuset="0x00000001"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000002" complete_cpuset="0x00000002" online_cpuset="0x00000002" allowed_cpuset="0x00000002" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000002" complete_cpuset="0x00000002" online_cpuset="0x00000002" allowed_cpuset="0x00000002" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000002" complete_cpuset="0x00000002" online_cpuset="0x00000002" allowed_cpuset="0x00000002" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="1" cpuset="0x00000002" complete_cpuset="0x00000002" online_cpuset="0x00000002" allowed_cpuset="0x00000002">
<object type="PU" os_index="1" cpuset="0x00000002" complete_cpuset="0x00000002" online_cpuset="0x00000002" allowed_cpuset="0x00000002"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000004" complete_cpuset="0x00000004" online_cpuset="0x00000004" allowed_cpuset="0x00000004" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000004" complete_cpuset="0x00000004" online_cpuset="0x00000004" allowed_cpuset="0x00000004" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000004" complete_cpuset="0x00000004" online_cpuset="0x00000004" allowed_cpuset="0x00000004" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="2" cpuset="0x00000004" complete_cpuset="0x00000004" online_cpuset="0x00000004" allowed_cpuset="0x00000004">
<object type="PU" os_index="2" cpuset="0x00000004" complete_cpuset="0x00000004" online_cpuset="0x00000004" allowed_cpuset="0x00000004"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000008" complete_cpuset="0x00000008" online_cpuset="0x00000008" allowed_cpuset="0x00000008" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000008" complete_cpuset="0x00000008" online_cpuset="0x00000008" allowed_cpuset="0x00000008" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000008" complete_cpuset="0x00000008" online_cpuset="0x00000008" allowed_cpuset="0x00000008" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="3" cpuset="0x00000008" complete_cpuset="0x00000008" online_cpuset="0x00000008" allowed_cpuset="0x00000008">
<object type="PU" os_index="3" cpuset="0x00000008" complete_cpuset="0x00000008" online_cpuset="0x00000008" allowed_cpuset="0x00000008"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000010" complete_cpuset="0x00000010" online_cpuset="0x00000010" allowed_cpuset="0x00000010" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000010" complete_cpuset="0x00000010" online_cpuset="0x00000010" allowed_cpuset="0x00000010" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000010" complete_cpuset="0x00000010" online_cpuset="0x00000010" allowed_cpuset="0x00000010" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="4" cpuset="0x00000010" complete_cpuset="0x00000010" online_cpuset="0x00000010" allowed_cpuset="0x00000010">
<object type="PU" os_index="4" cpuset="0x00000010" complete_cpuset="0x00000010" online_cpuset="0x00000010" allowed_cpuset="0x00000010"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000020" complete_cpuset="0x00000020" online_cpuset="0x00000020" allowed_cpuset="0x00000020" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000020" complete_cpuset="0x00000020" online_cpuset="0x00000020" allowed_cpuset="0x00000020" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000020" complete_cpuset="0x00000020" online_cpuset="0x00000020" allowed_cpuset="0x00000020" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="5" cpuset="0x00000020" complete_cpuset="0x00000020" online_cpuset="0x00000020" allowed_cpuset="0x00000020">
<object type="PU" os_index="5" cpuset="0x00000020" complete_cpuset="0x00000020" online_cpuset="0x00000020" allowed_cpuset="0x00000020"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000040" complete_cpuset="0x00000040" online_cpuset="0x00000040" allowed_cpuset="0x00000040" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000040" complete_cpuset="0x00000040" online_cpuset="0x00000040" allowed_cpuset="0x00000040" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000040" complete_cpuset="0x00000040" online_cpuset="0x00000040" allowed_cpuset="0x00000040" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="6" cpuset="0x00000040" complete_cpuset="0x00000040" online_cpuset="0x00000040" allowed_cpuset="0x00000040">
<object type="PU" os_index="6" cpuset="0x00000040" complete_cpuset="0x00000040" online_cpuset="0x00000040" allowed_cpuset="0x00000040"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000080" complete_cpuset="0x00000080" online_cpuset="0x00000080" allowed_cpuset="0x00000080" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000080" complete_cpuset="0x00000080" online_cpuset="0x00000080" allowed_cpuset="0x00000080" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000080" complete_cpuset="0x00000080" online_cpuset="0x00000080" allowed_cpuset="0x00000080" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="7" cpuset="0x00000080" complete_cpuset="0x00000080" online_cpuset="0x00000080" allowed_cpuset="0x00000080">
<object type="PU" os_index="7" cpuset="0x00000080" complete_cpuset="0x00000080" online_cpuset="0x00000080" allowed_cpuset="0x00000080"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000100" complete_cpuset="0x00000100" online_cpuset="0x00000100" allowed_cpuset="0x00000100" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000100" complete_cpuset="0x00000100" online_cpuset="0x00000100" allowed_cpuset="0x00000100" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000100" complete_cpuset="0x00000100" online_cpuset="0x00000100" allowed_cpuset="0x00000100" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="8" cpuset="0x00000100" complete_cpuset="0x00000100" online_cpuset="0x00000100" allowed_cpuset="0x00000100">
<object type="PU" os_index="8" cpuset="0x00000100" complete_cpuset="0x00000100" online_cpuset="0x00000100" allowed_cpuset="0x00000100"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000200" complete_cpuset="0x00000200" online_cpuset="0x00000200" allowed_cpuset="0x00000200" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000200" complete_cpuset="0x00000200" online_cpuset="0x00000200" allowed_cpuset="0x00000200" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000200" complete_cpuset="0x00000200" online_cpuset="0x00000200" allowed_cpuset="0x00000200" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="9" cpuset="0x00000200" complete_cpuset="0x00000200" online_cpuset="0x00000200" allowed_cpuset="0x00000200">
<object type="PU" os_index="9" cpuset="0x00000200" complete_cpuset="0x00000200" online_cpuset="0x00000200" allowed_cpuset="0x00000200"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000400" complete_cpuset="0x00000400" online_cpuset="0x00000400" allowed_cpuset="0x00000400" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000400" complete_cpuset="0x00000400" online_cpuset="0x00000400" allowed_cpuset="0x00000400" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000400" complete_cpuset="0x00000400" online_cpuset="0x00000400" allowed_cpuset="0x00000400" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="10" cpuset="0x00000400" complete_cpuset="0x00000400" online_cpuset="0x00000400" allowed_cpuset="0x00000400">
<object type="PU" os_index="10" cpuset="0x00000400" complete_cpuset="0x00000400" online_cpuset="0x00000400" allowed_cpuset="0x00000400"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00000800" complete_cpuset="0x00000800" online_cpuset="0x00000800" allowed_cpuset="0x00000800" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00000800" complete_cpuset="0x00000800" online_cpuset="0x00000800" allowed_cpuset="0x00000800" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00000800" complete_cpuset="0x00000800" online_cpuset="0x00000800" allowed_cpuset="0x00000800" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="11" cpuset="0x00000800" complete_cpuset="0x00000800" online_cpuset="0x00000800" allowed_cpuset="0x00000800">
<object type="PU" os_index="11" cpuset="0x00000800" complete_cpuset="0x00000800" online_cpuset="0x00000800" allowed_cpuset="0x00000800"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00001000" complete_cpuset="0x00001000" online_cpuset="0x00001000" allowed_cpuset="0x00001000" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00001000" complete_cpuset="0x00001000" online_cpuset="0x00001000" allowed_cpuset="0x00001000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00001000" complete_cpuset="0x00001000" online_cpuset="0x00001000" allowed_cpuset="0x00001000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="12" cpuset="0x00001000" complete_cpuset="0x00001000" online_cpuset="0x00001000" allowed_cpuset="0x00001000">
<object type="PU" os_index="12" cpuset="0x00001000" complete_cpuset="0x00001000" online_cpuset="0x00001000" allowed_cpuset="0x00001000"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00002000" complete_cpuset="0x00002000" online_cpuset="0x00002000" allowed_cpuset="0x00002000" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00002000" complete_cpuset="0x00002000" online_cpuset="0x00002000" allowed_cpuset="0x00002000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00002000" complete_cpuset="0x00002000" online_cpuset="0x00002000" allowed_cpuset="0x00002000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="13" cpuset="0x00002000" complete_cpuset="0x00002000" online_cpuset="0x00002000" allowed_cpuset="0x00002000">
<object type="PU" os_index="13" cpuset="0x00002000" complete_cpuset="0x00002000" online_cpuset="0x00002000" allowed_cpuset="0x00002000"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00004000" complete_cpuset="0x00004000" online_cpuset="0x00004000" allowed_cpuset="0x00004000" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00004000" complete_cpuset="0x00004000" online_cpuset="0x00004000" allowed_cpuset="0x00004000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00004000" complete_cpuset="0x00004000" online_cpuset="0x00004000" allowed_cpuset="0x00004000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="14" cpuset="0x00004000" complete_cpuset="0x00004000" online_cpuset="0x00004000" allowed_cpuset="0x00004000">
<object type="PU" os_index="14" cpuset="0x00004000" complete_cpuset="0x00004000" online_cpuset="0x00004000" allowed_cpuset="0x00004000"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00008000" complete_cpuset="0x00008000" online_cpuset="0x00008000" allowed_cpuset="0x00008000" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00008000" complete_cpuset="0x00008000" online_cpuset="0x00008000" allowed_cpuset="0x00008000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00008000" complete_cpuset="0x00008000" online_cpuset="0x00008000" allowed_cpuset="0x00008000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="15" cpuset="0x00008000" complete_cpuset="0x00008000" online_cpuset="0x00008000" allowed_cpuset="0x00008000">
<object type="PU" os_index="15" cpuset="0x00008000" complete_cpuset="0x00008000" online_cpuset="0x00008000" allowed_cpuset="0x00008000"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00010000" complete_cpuset="0x00010000" online_cpuset="0x00010000" allowed_cpuset="0x00010000" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00010000" complete_cpuset="0x00010000" online_cpuset="0x00010000" allowed_cpuset="0x00010000" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
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<object type="PU" os_index="54" cpuset="0x00400000,0x0" complete_cpuset="0x00400000,0x0" online_cpuset="0x00400000,0x0" allowed_cpuset="0x00400000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x00800000,0x0" complete_cpuset="0x00800000,0x0" online_cpuset="0x00800000,0x0" allowed_cpuset="0x00800000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x00800000,0x0" complete_cpuset="0x00800000,0x0" online_cpuset="0x00800000,0x0" allowed_cpuset="0x00800000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x00800000,0x0" complete_cpuset="0x00800000,0x0" online_cpuset="0x00800000,0x0" allowed_cpuset="0x00800000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="55" cpuset="0x00800000,0x0" complete_cpuset="0x00800000,0x0" online_cpuset="0x00800000,0x0" allowed_cpuset="0x00800000,0x0">
<object type="PU" os_index="55" cpuset="0x00800000,0x0" complete_cpuset="0x00800000,0x0" online_cpuset="0x00800000,0x0" allowed_cpuset="0x00800000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x01000000,0x0" complete_cpuset="0x01000000,0x0" online_cpuset="0x01000000,0x0" allowed_cpuset="0x01000000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x01000000,0x0" complete_cpuset="0x01000000,0x0" online_cpuset="0x01000000,0x0" allowed_cpuset="0x01000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x01000000,0x0" complete_cpuset="0x01000000,0x0" online_cpuset="0x01000000,0x0" allowed_cpuset="0x01000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="56" cpuset="0x01000000,0x0" complete_cpuset="0x01000000,0x0" online_cpuset="0x01000000,0x0" allowed_cpuset="0x01000000,0x0">
<object type="PU" os_index="56" cpuset="0x01000000,0x0" complete_cpuset="0x01000000,0x0" online_cpuset="0x01000000,0x0" allowed_cpuset="0x01000000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x02000000,0x0" complete_cpuset="0x02000000,0x0" online_cpuset="0x02000000,0x0" allowed_cpuset="0x02000000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x02000000,0x0" complete_cpuset="0x02000000,0x0" online_cpuset="0x02000000,0x0" allowed_cpuset="0x02000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x02000000,0x0" complete_cpuset="0x02000000,0x0" online_cpuset="0x02000000,0x0" allowed_cpuset="0x02000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="57" cpuset="0x02000000,0x0" complete_cpuset="0x02000000,0x0" online_cpuset="0x02000000,0x0" allowed_cpuset="0x02000000,0x0">
<object type="PU" os_index="57" cpuset="0x02000000,0x0" complete_cpuset="0x02000000,0x0" online_cpuset="0x02000000,0x0" allowed_cpuset="0x02000000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x04000000,0x0" complete_cpuset="0x04000000,0x0" online_cpuset="0x04000000,0x0" allowed_cpuset="0x04000000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x04000000,0x0" complete_cpuset="0x04000000,0x0" online_cpuset="0x04000000,0x0" allowed_cpuset="0x04000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x04000000,0x0" complete_cpuset="0x04000000,0x0" online_cpuset="0x04000000,0x0" allowed_cpuset="0x04000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="58" cpuset="0x04000000,0x0" complete_cpuset="0x04000000,0x0" online_cpuset="0x04000000,0x0" allowed_cpuset="0x04000000,0x0">
<object type="PU" os_index="58" cpuset="0x04000000,0x0" complete_cpuset="0x04000000,0x0" online_cpuset="0x04000000,0x0" allowed_cpuset="0x04000000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x08000000,0x0" complete_cpuset="0x08000000,0x0" online_cpuset="0x08000000,0x0" allowed_cpuset="0x08000000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x08000000,0x0" complete_cpuset="0x08000000,0x0" online_cpuset="0x08000000,0x0" allowed_cpuset="0x08000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x08000000,0x0" complete_cpuset="0x08000000,0x0" online_cpuset="0x08000000,0x0" allowed_cpuset="0x08000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="59" cpuset="0x08000000,0x0" complete_cpuset="0x08000000,0x0" online_cpuset="0x08000000,0x0" allowed_cpuset="0x08000000,0x0">
<object type="PU" os_index="59" cpuset="0x08000000,0x0" complete_cpuset="0x08000000,0x0" online_cpuset="0x08000000,0x0" allowed_cpuset="0x08000000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x10000000,0x0" complete_cpuset="0x10000000,0x0" online_cpuset="0x10000000,0x0" allowed_cpuset="0x10000000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x10000000,0x0" complete_cpuset="0x10000000,0x0" online_cpuset="0x10000000,0x0" allowed_cpuset="0x10000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x10000000,0x0" complete_cpuset="0x10000000,0x0" online_cpuset="0x10000000,0x0" allowed_cpuset="0x10000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="60" cpuset="0x10000000,0x0" complete_cpuset="0x10000000,0x0" online_cpuset="0x10000000,0x0" allowed_cpuset="0x10000000,0x0">
<object type="PU" os_index="60" cpuset="0x10000000,0x0" complete_cpuset="0x10000000,0x0" online_cpuset="0x10000000,0x0" allowed_cpuset="0x10000000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x20000000,0x0" complete_cpuset="0x20000000,0x0" online_cpuset="0x20000000,0x0" allowed_cpuset="0x20000000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x20000000,0x0" complete_cpuset="0x20000000,0x0" online_cpuset="0x20000000,0x0" allowed_cpuset="0x20000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x20000000,0x0" complete_cpuset="0x20000000,0x0" online_cpuset="0x20000000,0x0" allowed_cpuset="0x20000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="61" cpuset="0x20000000,0x0" complete_cpuset="0x20000000,0x0" online_cpuset="0x20000000,0x0" allowed_cpuset="0x20000000,0x0">
<object type="PU" os_index="61" cpuset="0x20000000,0x0" complete_cpuset="0x20000000,0x0" online_cpuset="0x20000000,0x0" allowed_cpuset="0x20000000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x40000000,0x0" complete_cpuset="0x40000000,0x0" online_cpuset="0x40000000,0x0" allowed_cpuset="0x40000000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x40000000,0x0" complete_cpuset="0x40000000,0x0" online_cpuset="0x40000000,0x0" allowed_cpuset="0x40000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x40000000,0x0" complete_cpuset="0x40000000,0x0" online_cpuset="0x40000000,0x0" allowed_cpuset="0x40000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="62" cpuset="0x40000000,0x0" complete_cpuset="0x40000000,0x0" online_cpuset="0x40000000,0x0" allowed_cpuset="0x40000000,0x0">
<object type="PU" os_index="62" cpuset="0x40000000,0x0" complete_cpuset="0x40000000,0x0" online_cpuset="0x40000000,0x0" allowed_cpuset="0x40000000,0x0"/>
</object>
</object>
</object>
</object>
<object type="Cache" cpuset="0x80000000,0x0" complete_cpuset="0x80000000,0x0" online_cpuset="0x80000000,0x0" allowed_cpuset="0x80000000,0x0" cache_size="1048576" depth="2" cache_linesize="64" cache_associativity="8" cache_type="0">
<object type="Cache" cpuset="0x80000000,0x0" complete_cpuset="0x80000000,0x0" online_cpuset="0x80000000,0x0" allowed_cpuset="0x80000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="1">
<object type="Cache" cpuset="0x80000000,0x0" complete_cpuset="0x80000000,0x0" online_cpuset="0x80000000,0x0" allowed_cpuset="0x80000000,0x0" cache_size="65536" depth="1" cache_linesize="64" cache_associativity="4" cache_type="2">
<object type="Core" os_index="63" cpuset="0x80000000,0x0" complete_cpuset="0x80000000,0x0" online_cpuset="0x80000000,0x0" allowed_cpuset="0x80000000,0x0">
<object type="PU" os_index="63" cpuset="0x80000000,0x0" complete_cpuset="0x80000000,0x0" online_cpuset="0x80000000,0x0" allowed_cpuset="0x80000000,0x0"/>
</object>
</object>
</object>
</object>
</object>
</object>
<object type="Bridge" os_index="0" bridge_type="0-1" depth="0" bridge_pci="0000:[00-00]">
<object type="PCIDev" os_index="64" pci_busid="0000:00:04.0" pci_type="0108 [1d0f:8061] [1d0f:0000] 00" pci_link_speed="0.000000">
<info name="PCISlot" value="4"/>
</object>
<object type="PCIDev" os_index="80" pci_busid="0000:00:05.0" pci_type="0200 [1d0f:ec20] [1d0f:ec20] 00" pci_link_speed="0.000000">
<info name="PCISlot" value="5"/>
<object type="OSDev" name="eth0" osdev_type="2">
<info name="Address" value="0a:01:64:7e:90:b7"/>
</object>
</object>
<object type="PCIDev" os_index="96" pci_busid="0000:00:06.0" pci_type="0200 [1d0f:efa1] [1d0f:efa1] 00" pci_link_speed="0.000000">
<info name="PCISlot" value="6"/>
<object type="OSDev" name="rdmap0s6" osdev_type="3">
<info name="NodeGUID" value="0000:0000:0000:0000"/>
<info name="SysImageGUID" value="0000:0000:0000:0000"/>
<info name="Port1State" value="4"/>
<info name="Port1LID" value="0x0"/>
<info name="Port1LMC" value="1"/>
<info name="Port1GID0" value="fe80:0000:0000:0000:0801:64ff:fe7e:90b7"/>
</object>
</object>
</object>
</object>
</topology>
It's the same topology I had before, but I tested against it anyway and it still works for me:
$ mpirun -n 2 --map-by slot --bind-to socket --prtemca hwloc_use_topo_file Amazon2.xml --prtemca ras_simulator_num_nodes 1 --display map-devel hostname
================================= JOB MAP =================================
Data for JOB prterun-Ralphs-iMac-2-70007@1 offset 0 Total slots allocated 64
Mapper requested: NULL Last mapper: round_robin Mapping policy: BYSLOT:NOOVERSUBSCRIBE Ranking policy: SLOT
Binding policy: PACKAGE Cpu set: N/A PPR: N/A Cpus-per-rank: N/A Cpu Type: HWT
Num new daemons: 0 New daemon starting vpid INVALID
Num nodes: 1
Data for node: nodeA0 State: 3 Flags: MAPPED:SLOTS_GIVEN
Daemon: [prterun-Ralphs-iMac-2-70007@0,1] Daemon launched: False
Num slots: 64 Slots in use: 2 Oversubscribed: FALSE
Num slots allocated: 64 Max slots: 64 Num procs: 2
Data for proc: [prterun-Ralphs-iMac-2-70007@1,0]
Pid: 0 Local rank: 0 Node rank: 0 App rank: 0
State: INITIALIZED App_context: 0
Binding: package[0][hwt:0-63]
Data for proc: [prterun-Ralphs-iMac-2-70007@1,1]
Pid: 0 Local rank: 1 Node rank: 1 App rank: 1
State: INITIALIZED App_context: 0
Binding: package[0][hwt:0-63]
Warning: This map has been generated with the DONOTLAUNCH option;
The compute node architecture has not been probed, and the displayed
map reflects the HEADNODE ARCHITECTURE. On systems with a different
architecture between headnode and compute nodes, the map can be
displayed using `prte --display map /bin/true`, which will launch
enough of the DVM to probe the compute node architecture.
=============================================================
This is the output on my end, with Amazon2.xml
being the file I pasted above
[ec2-user@c7g-st-n64-1 ~]$ mpirun -n 2 --map-by slot --bind-to socket --prtemca hwloc_use_topo_file Amazon2.xml --prtemca ras_simulator_num_nodes 1 --display map-devel hostname
--------------------------------------------------------------------------
While computing bindings, we found no available cpus on
the following node:
Node: nodeA0
Please check your allocation.
--------------------------------------------------------------------------
I did a fresh recursive clone, submodule pointer update and build to confirm I wasn't using an older mpirun
Sorry, but I cannot replicate with HEAD of the PMix/PRRTE master branches.
I did a fresh recursive clone, submodule pointer update and build to confirm I wasn't using an older mpirun
That process will result in an out-of-date build of PRRTE, I'm afraid. The OMPI main branch hasn't committed the updated submodule pointers, so you are still pointing to old code. You have to go to the 3rd-party subdirectories and explicitly checkout the master branch and then "pull" to get the latest code.
Sorry, but I cannot replicate with HEAD of the PMix/PRRTE master branches.
I did a fresh recursive clone, submodule pointer update and build to confirm I wasn't using an older mpirun
That process will result in an out-of-date build of PRRTE, I'm afraid. The OMPI main branch hasn't committed the updated submodule pointers, so you are still pointing to old code. You have to go to the 3rd-party subdirectories and explicitly checkout the master branch and then "pull" to get the latest code.
Sorry if I wasn't clear; this is what I did.
Anyway, I'm satisfied with the original issue being intended behavior, so I'll close this issue. Thanks for your help! Let me know if you'd like any more information from me if that helps with debugging any similar issues at the moment.
I have a question about a difference I noticed between 4.1.x and 5.x/
main
. The 5.x behavior makes sense to me, but I'm not sure if it's intentional or not. It may be an unexpected change for some users.I noticed Open MPI@
main
complains about--bind-to socket
when requesting more processes than available sockets:However, this works with 4.1.x:
Specifying
--map-by ppr:2:node
seems to trigger an error in PRRTE:...yet it works fine with 4.1.x:
I can, however,
--oversubscribe
with no issue:For sake of comparison, I ran the above commands with an identical setup on a host with 2 sockets
--bind-to socket
,main
(same error as host with 1 socket)--bind-to socket --map-by ppr:2:node
,main
(successful, unlike the host with 1 socket)--oversubscribe
,main
(same as host with 1 socket)--bind-to socket
,4.1.5--bind-to socket --map-by ppr:2:node
,4.1.5 (same as host with 1 socket)--oversubscribe
,4.1.5lscpu
output for host with 1 socket (c7g.16xlarge EC2 instance)lscpu
output for host with 2 sockets (c5n.18xlarge EC2 instance)