open-ortho / dent-oip

DICOM Implementation of ADA SCDI WP-1100
0 stars 0 forks source link

PDF release not working #6

Closed zgypa closed 1 month ago

zgypa commented 1 month ago
$ pipenv run make latexpdf
...
The LaTeX files are in dist/latex.
Run 'make' in that directory to run these through (pdf)latex
(use `make latexpdf' here to do that automatically).
make[1]: Entering directory '/mnt/c/Users/afm/git/open-ortho/dent-oip/dist/latex'
latexmk -pdf -dvi- -ps-  'dent-oip.tex'
make[1]: latexmk: No such file or directory
make[1]: *** [Makefile:29: dent-oip.pdf] Error 127
make[1]: Leaving directory '/mnt/c/Users/afm/git/open-ortho/dent-oip/dist/latex'
make: *** [Makefile:85: latexpdf] Error 2

And when installed:

The LaTeX files are in dist/latex.
Run 'make' in that directory to run these through (pdf)latex
(use `make latexpdf' here to do that automatically).
latexmk -pdf -dvi- -ps-  'dent-oip.tex'
Rc files read:
  latexmkrc
Latexmk: This is Latexmk, John Collins, 7 Apr. 2024. Version 4.85.
No existing .aux file, so I'll make a simple one, and require run of *latex.
Latexmk: applying rule 'pdflatex'...
Rule 'pdflatex':  Reasons for rerun
Category 'other':
  Rerun of 'pdflatex' forced or previously required:
    Reason or flag: 'Initial setup'

------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex   -recorder  "dent-oip.tex"'
------------
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./dent-oip.tex
LaTeX2e <2023-11-01> patch level 1
L3 programming layer <2024-02-20>
(./sphinxmanual.cls
Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/report.cls
Document Class: report 2023/05/17 v1.4n Standard LaTeX document class
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/size10.clo)))
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/cmap/cmap.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/fontenc.sty<<t1.cmap>>)
 (/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/babel/babel.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/babel/txtbabel.def)
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/babel-english/english.ldf)
)
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/babel/locale/en/babel-engl
ish.tex)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/tex-gyre/tgtermes.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/kvoptions/kvoptions.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)))
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/tex-gyre/tgheros.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/fncychap/fncychap.sty)
(./sphinx.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/graphics-def/pdftex.def)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/float/float.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/wrapfig/wrapfig.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/capt-of/capt-of.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
 (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty

Package sphinx Warning: The package pict2e is required for rounded boxes.
(sphinx)                It does not seem to be available on your system.
(sphinx)                Options for setting radii will be ignored.

Package sphinx Warning: The package ellipse is required for elliptical corners.

(sphinx)                It does not seem to be available on your system.
(sphinx)                All non-straight corners will use circle arcs..

) (./sphinxlatexadmonitions.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/framed/framed.sty))
(./sphinxlatexliterals.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/alltt.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/upquote/upquote.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/needspace/needspace.sty))
(./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty)
(./sphinxhighlight.sty) (./sphinxlatextables.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/tabulary/tabulary.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/tools/array.sty)

LaTeX Warning: You have requested, on input line 20, version
               `2024/05/23' of package array,
               but only version
               `2023/10/16 v2.5g Tabular extension package (FMi)'
               is available.

) (/usr/local/texlive/2024basic/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/varwidth/varwidth.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/colortbl/colortbl.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/booktabs/booktabs.sty))
(./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty
) (./sphinxlatexindbibtoc.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/makeidx.sty))
(./sphinxlatexstylepage.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/parskip/parskip.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/parskip/parskip-2001-04-09.s
ty)) (/usr/local/texlive/2024basic/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty))
 (./sphinxlatexstyleheadings.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/titlesec/titlesec.sty))
(./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty))
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/iftex/ifvtex.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/iftex/iftex.sty)))
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.
sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
 (/usr/local/texlive/2024basic/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/auxhook/auxhook.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/gettitlestring/gettitlestr
ing.sty))
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/url/url.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)
) (/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/rerunfilecheck/rerunfilechec
k.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/generic/uniquecounter/uniquecounte
r.sty))) (/usr/local/texlive/2024basic/texmf-dist/tex/latex/oberdiek/hypcap.sty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
) (./sphinxmessages.sty)
Writing index file dent-oip.idx
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/tex-gyre/t1qtm.fd)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/l3backend/l3backend-pdftex.d
ef) (./dent-oip.aux)
(/usr/local/texlive/2024basic/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.s
ty
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/tex-gyre/t1qhv.fd)<<ot1.cmap
>> (/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/local/texlive/2024basic/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/usr/lo
cal/texlive/2024basic/texmf-var/fonts/map/pdftex/updmap/pdftex.map}{/usr/local/
texlive/2024basic/texmf-dist/fonts/enc/dvips/tex-gyre/q-ec.enc}] [2]
No file dent-oip.toc.
[1] [2] [1] [2]
Chapter 1.
[3] [4]
Chapter 2.
[5] [6]
Chapter 3.

LaTeX Font Warning: Font shape `T1/txtt/m/n' undefined
(Font)              using `T1/cmr/m/n' instead on input line 126.

[7 <./DENT-OIP-building.drawio.png>] [8]
Chapter 4.

LaTeX Warning: Hyper reference `Appendix/ViewExamples/index:view-examples' on p
age 9 undefined on input line 181.

[9] (/usr/local/texlive/2024basic/texmf-dist/tex/latex/tex-gyre/ts1qtm.fd)
[10{/usr/local/texlive/2024basic/texmf-dist/fonts/enc/dvips/tex-gyre/q-ts1.enc}
] [11] [12] [13]

LaTeX Warning: Hyper reference `DICOM/VL_Photographic_Image/General_Study/0008_
1030_study_description:study-description' on page 14 undefined on input line 63
8.

! Undefined control sequence.
\endtabulary ->\SuspendTagging 
                               {tabulary}\gdef \@halignto {}\def \@elt ##1{\...
l.761 \end{tabulary}

? 
zgypa commented 1 month ago

both using latexpdf and sphinx -b pdf proved to be unstable. Too much maintenance. Resorting to LibreOffice.