Closed dbrnz closed 1 year ago
Is /dynamic/demos/apinat/modelPopulationsReferences/{model_id}
not working?
Couldn't access https://scicrunch.org/api/1/sparc-scigraph/dynamic/demos/apinat/modelPopulationsReferences/https://apinatomy.org/uris/models/ard-arm-cardiac
@tgbugs has this been resolved??
works, in python you call urllib.parse.quote(url, '')
on the model_id to ensure it matches (there is no curied form of https://apinatomy/org/uris/models/
right now).
Thanks. I now get back the following, which doesn't show any publications. How do we get the publications (provenance) for a model?
{'nodes': [{'id': 'ilxtr:neuron-type-aacar-2m',
'lbl': 'neuron type aacar 2m',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 2m'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-2i',
'lbl': 'neuron type aacar 2i',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 2i'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-9v',
'lbl': 'neuron type aacar 9v',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 9v'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-10a',
'lbl': 'neuron type aacar 10a',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 10a'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-10v',
'lbl': 'neuron type aacar 10v',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 10v'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-8v',
'lbl': 'neuron type aacar 8v',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 8v'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-1',
'lbl': 'neuron type aacar 1',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 1'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-13',
'lbl': 'neuron type aacar 13',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 13'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-8a',
'lbl': 'neuron type aacar 8a',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 8a'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-9a',
'lbl': 'neuron type aacar 9a',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 9a'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-11',
'lbl': 'neuron type aacar 11',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 11'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-6',
'lbl': 'neuron type aacar 6',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 6'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-7a',
'lbl': 'neuron type aacar 7a',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 7a'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'elements:OntologyTerm', 'lbl': None, 'meta': {'types': ['Class']}},
{'id': 'ilxtr:neuron-type-aacar-4',
'lbl': 'neuron type aacar 4',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 4'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-12',
'lbl': 'neuron type aacar 12',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 12'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-5',
'lbl': 'neuron type aacar 5',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 5'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-7v',
'lbl': 'neuron type aacar 7v',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 7v'],
'https://apinatomy.org/uris/readable/generated': [True],
'category': ['cell']}}],
'edges': [{'sub': 'ilxtr:neuron-type-aacar-10v',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-9v',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-12',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-8a',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-2m',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-4',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-8v',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-7a',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-11',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-2i',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-1',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-9a',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-5',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-10a',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-13',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-7v',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-6',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}}],
'meta': {}}
Ah, I think there was a schema change in the predicate used for linking references so I need to update the query.
The query has been updated to account for the schema change and the results are as expected. Let me know if this is working as desired on sparc-scigraph and I can deploy the query changes to sckan-scigraph. See https://github.com/SciCrunch/sparc-curation/commit/4c0d14584735d0f418e2d16f9d972b1e839d6f6d#diff-ccf692fad0a138b6f517b51f8c65539e0594bed294ff171fb749a3615aba6a68L2946
@tgbugs the query:
https://scicrunch.org/api/1/sparc-scigraph/dynamic/demos/apinat/modelPopulationsReferences/https%3A%2F%2Fapinatomy.org%2Furis%2Fmodels%2Fard-arm-cardiac
returns the following, which is hardly the set of publications for the model.
{'edges': [{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-10v'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-2i'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-9v'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-6'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-5'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-4'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-13'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-8v'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-1'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-8a'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-12'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-7v'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-9a'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-2m'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-10a'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-11'},
{'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']},
'obj': 'elements:OntologyTerm',
'pred': 'type',
'sub': 'ilxtr:neuron-type-aacar-7a'}],
'meta': {},
'nodes': [{'id': 'elements:OntologyTerm',
'lbl': None,
'meta': {'types': ['Class']}},
{'id': 'ilxtr:neuron-type-aacar-6',
'lbl': 'neuron type aacar 6',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 6'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-11',
'lbl': 'neuron type aacar 11',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 11'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-2m',
'lbl': 'neuron type aacar 2m',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 2m'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-8a',
'lbl': 'neuron type aacar 8a',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 8a'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-8v',
'lbl': 'neuron type aacar 8v',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 8v'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-2i',
'lbl': 'neuron type aacar 2i',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 2i'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-10a',
'lbl': 'neuron type aacar 10a',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar '
'10a'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-1',
'lbl': 'neuron type aacar 1',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 1'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-9a',
'lbl': 'neuron type aacar 9a',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 9a'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-10v',
'lbl': 'neuron type aacar 10v',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar '
'10v'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-4',
'lbl': 'neuron type aacar 4',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 4'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-13',
'lbl': 'neuron type aacar 13',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 13'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-5',
'lbl': 'neuron type aacar 5',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 5'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-12',
'lbl': 'neuron type aacar 12',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 12'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-9v',
'lbl': 'neuron type aacar 9v',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 9v'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-7a',
'lbl': 'neuron type aacar 7a',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 7a'],
'types': ['Class', 'cell']}},
{'id': 'ilxtr:neuron-type-aacar-7v',
'lbl': 'neuron type aacar 7v',
'meta': {'category': ['cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron '
'type '
'aacar 7v'],
'types': ['Class', 'cell']}}]}
Since I pushed the most recent preview release something may have changed. Will investigate.
Fixed now. The new version of the pipelines left out the apinatomy:Reference
triples so the final type check did not pass. This has been corrected via https://github.com/open-physiology/open-physiology-viewer/commit/9a7fa1f94fe89d2ebcf397777e2dbb28254f154d and the models have been redeployed and a new graph load pushed to sparc-scigraph.
I still get:
Request https://scicrunch.org/api/1/sparc-scigraph/dynamic/demos/apinat/modelPopulationsReferences/https%3A%2F%2Fapinatomy.org%2Furis%2Fmodels%2Fard-arm-cardiac
{'nodes': [{'id': 'elements:OntologyTerm',
'lbl': None,
'meta': {'types': ['Class']}},
{'id': 'elements:Reference', 'lbl': None, 'meta': {'types': ['Class']}},
{'id': 'ilxtr:neuron-type-aacar-5',
'lbl': 'neuron type aacar 5',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 5'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-13',
'lbl': 'neuron type aacar 13',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 13'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-9v',
'lbl': 'neuron type aacar 9v',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 9v'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-2i',
'lbl': 'neuron type aacar 2i',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 2i'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-6',
'lbl': 'neuron type aacar 6',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 6'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-8a',
'lbl': 'neuron type aacar 8a',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 8a'],
'category': ['cell']}},
{'id': 'PMID:27783854', 'lbl': None, 'meta': {'types': ['NamedIndividual']}},
{'id': 'ilxtr:neuron-type-aacar-8v',
'lbl': 'neuron type aacar 8v',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 8v'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-7a',
'lbl': 'neuron type aacar 7a',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 7a'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-2m',
'lbl': 'neuron type aacar 2m',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 2m'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-1',
'lbl': 'neuron type aacar 1',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 1'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-9a',
'lbl': 'neuron type aacar 9a',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 9a'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-10a',
'lbl': 'neuron type aacar 10a',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 10a'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-4',
'lbl': 'neuron type aacar 4',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 4'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-12',
'lbl': 'neuron type aacar 12',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 12'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-10v',
'lbl': 'neuron type aacar 10v',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 10v'],
'category': ['cell']}},
{'id': 'doi:10.1002/cphy.c150046',
'lbl': None,
'meta': {'types': ['NamedIndividual']}},
{'id': 'ilxtr:neuron-type-aacar-11',
'lbl': 'neuron type aacar 11',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 11'],
'category': ['cell']}},
{'id': 'ilxtr:neuron-type-aacar-7v',
'lbl': 'neuron type aacar 7v',
'meta': {'types': ['Class', 'cell'],
'http://www.w3.org/2000/01/rdf-schema#label': ['neuron type aacar 7v'],
'category': ['cell']}}],
'edges': [{'sub': 'ilxtr:neuron-type-aacar-7v',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-2i',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-1',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-13',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-12',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-9v',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-5',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'doi:10.1002/cphy.c150046',
'obj': 'elements:Reference',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-10a',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-6',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-8v',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-9a',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-7a',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-4',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-2m',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'PMID:27783854',
'obj': 'elements:Reference',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-10v',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-11',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}},
{'sub': 'ilxtr:neuron-type-aacar-8a',
'obj': 'elements:OntologyTerm',
'pred': 'type',
'meta': {'isDefinedBy': ['https://apinatomy.org/uris/models/ard-arm-cardiac']}}],
'meta': {}}
Oops, let me dig a bit deeper...
Is https://scicrunch.org/api/1/sparc-scigraph/dynamic/demos/apinat/modelPopulationsReferences
the correct endpoint to get the publications associated with a model? It's returning the neuron populations that reference the model, which is sort-of what the name modelPopulationsReferences
implies, so I wonder if you've given me the wrong query to use... :)
This is the correct endpoint, and if you ctrl-f
for doi:
and PMID:
you will see that the references are in the results that you pasted.
Thanks @tgbugs all is now good. (It all become obvious when I queried Bolser-Lewis, which has a lot of publications (as opposed to Ardelll's two), and also I wasn't expecting to see references to the neuron populations...). Am happy to close this one!
What is the appropriate query to use?
This would go towards resolving #30.