objects identified via fullID are not correctly serialized

[tgbugs]

e.g. for apinatomy:annotates only the value of fullID should be present in the list not an object with a single fullID key and value.

[tgbugs]

This is also an issue because in the current generated model only id is used which will lead to collisions and confusion if e.g. an ontology id annotates two internal objects that have the same id but different fullIDs.

edit: this might just be confusing because jsonld doesn't allow the empty prefix so you can't use :value to distinguish from value.

[tgbugs]

Actually it seems that this might be an issue with the jsonld flattening.