Closed jhammock closed 1 year ago
very impressive! Thanks for sharing.
Any chance you can provide the many entries in separate files named:
[dataset-id].md
so
le-duc-et-al-2015.md
would contain:
---
layout: dataset
id: le-duc-et-al-2015
name: Le Duc et al, 2015
contentURL: https://opendata.eol.org/dataset/2285692d-f8ea-45b5-a92a-0d14af030270/resource/ce0b9075-8856-4757-998d-81ac6e842703/download/leduc.zip
datasetDOI_URL: https://opendata.eol.org/dataset/le-duc-et-al-2015
contactName: Jen Hammock
contactEmail: secretariat@eol.org
license: CC0
traitList: behavioral circadian rhythm
higherGeography:
decimalLatitude:
decimalLongitude:
taxon: Palaeognathae
eventDate:
paperDOIcitation: https://doi.org/10.1186/s13059-015-0711-4
description: Le Duc, D., Renaud, G., Krishnan, A. et al. Kiwi genome provides insights into evolution of a nocturnal lifestyle. Genome Biol 16, 147 (2015). https://doi.org/10.1186/s13059-015-0711-4
taxaList: Apteryx|Ratites
usefulClasses:
dataStandard:
standardizationScripts:
webpage:
---
So, a separate issue for each source?
In these batch situations, I was hoping to get a single zip file with one md file per dataset as described above.
If this is too much trouble, I'd probably end up writing a little script that does it.
Just let me know what works best for you.
Please review the datasets you've added via: https://opentraits.org/datasets . Holler if there's anything missing or needs updating! Thanks for sharing this massive amount of trait datasets.
A sample of the records suggests they are all as I expected. I will re-open this if I find any in need of help. This does rather fill the registry with "sillier" datasets than those that went before, doesn't it? That's the trouble with taxonomically inferable data.
Good to hear that at a first glance, the registration went ok.
Could you give an example of a sillier dataset? Not quite sure what you mean.
Oh, it's only that many of these datasets only contain one or two records, eg: https://opentraits.org/datasets/alava-and-aguirre-2005 asserts one thing: that Acanthocephala are vermiform. It's not even the main thrust of the reference, but it was a fairly contemporary, accessible source, so that's what we're using. And it's darn useful on EOL, if you want to search for the worm-shaped parasites of North America or whatever, but on its own it hardly warrants the description "dataset".
Ah ok, I can see your point. I wouldn't say a small and important dataset is silly. I'd say its useful, even if it contains one row.
PS I very much like searching for worm-shaped parasites of North America. :smile:
Nano-publications, here we come!
OTN: nanopubs, megapubs and everything in-between.
Please fill out the template below and click "submit" to request a trait dataset to the Open Traits Network. Please allow for some time for @open-traits-network/editors to review your submission.
Editors @open-traits-network/editors: please see https://github.com/open-traits-network/open-traits-network.github.io/tree/master/_datasets#readme for information on registration process.