jhpoelen
commented
4 years ago btw, I used http://convertcsv.com/csv-to-yaml.htm to convert recent entries in yaml:
---
-
Timestamp: 6/25/2019 14:45:39
datasetDOI_URL: http://ecotaxonomy.org
contactName: Anton Potapov | Dorothee Sandmann | Stefan Scheu
contactEmail: potapov.msu@gmail.com
license: http://creativecommons.org/licenses/by-nc/4.0/
traitList: Multiple morphological and ecological traits
higherGeography: Global | Sumatra | Ecuador | Canada | Europe
decimalLatitude:
decimalLongitude:
taxon: Animalia | Arthropoda | Arachnida | Insecta | Myriapoda | Araneae | Collembola | Oribatida | Mesostigmata | Formicidae
eventDate:
paperDOIcitation: 10.3897/biss.3.37146
description: "Ecotaxonomy (ecotaxonomy.org), is an open web platform, that allows traits, taxa, individuals and samples to be linked within research projects. Any morphological or ecological traits can be customized inside the system and attached either to taxa, individuals, or environmental samples. The system is flexible to include any group of organisms. The taxonomic system of Ecotaxonomy is based on the Global Biodiversity Information Facility (gbif.org), but may be complemented by morphospecies, pictures, literature and other parameters. As public output, the system provides interactive\nidentification keys and web catalogs of traits and taxa."
taxaList: Multiple groups of organisms (focused on Arthropoda)
usefulClasses: morphology, inferred traits, ecological traits, taxonomic traits, individual traits
dataStandard: Internal standards will be linked to Darwin Core and Ecological Trait-Data Standard via API interface
standardizationScripts:
datasetName: Ecotaxonomy
datasetID:
-
Timestamp: 8/22/2019 15:03:02
datasetDOI_URL: https://doi.org/10.6084/m9.figshare.4644424
contactName: Brunno Freire Oliveira | Gabriel C. Costa
contactEmail:
license: CC BY 4.0
traitList: Habitat | Diet | Circadian_activity_rhythm | Seasonality | Body_weight | Age_at_mature_min_y | Age_at_mature_max_y | Body_length | Size_at_mature_min_mm | Size_at_mature_max_mm | Longevity_min_y | Longevity_max_y | Litter_size_min_n | Litter_size_max_n | Reproductive_output_y | Offspring_size_min_mm | Offspring_size_min_mm | Breeding strategy
higherGeography: Africa | Asia | Europe | North America | Oceania | South America
decimalLatitude:
decimalLongitude:
taxon: Amphibia
eventDate:
paperDOIcitation: 10.1038/sdata.2017.123
description: Global database for amphibian ecological traits (collection of data from literature)
taxaList:
usefulClasses: literatureData
dataStandard: none
standardizationScripts:
datasetName: AmphiBio
datasetID:
-
Timestamp: 8/22/2019 15:18:05
datasetDOI_URL: https://doi.org/10.3897/BDJ.2.e4123
contactName: Audrey Trochet
contactEmail:
license: CC-0
traitList: Body_weight | Male_body_length | Female_body_length | Body_length | Foot length | Tibia length | Hind limb length | Metamorphosis size | Number of eggs | Survival rates in adults | Sexual maturity | Movement ability
higherGeography: Europe
decimalLatitude:
decimalLongitude:
taxon: Amphibia
eventDate:
paperDOIcitation: https://doi.org/10.3897/BDJ.2.e4123
description: A database of life-history traits of European amphibians (collection of data from literature)
taxaList:
usefulClasses: literatureData
dataStandard: none
standardizationScripts:
datasetName: European Amphibian Traits Trochet
datasetID:
-
Timestamp: 8/26/2019 16:25:08
datasetDOI_URL: https://doi.org/10.5061/dryad.53ds2
contactName: Martin M Gossner
contactEmail:
license: CC BY 4.0
traitList: Body_size | Dispersal_ability | Feeding_guild | Feeding_mode | Feeding_specialization | Feeding_tissue | Feeding_plant_part | Endophagous_lifestyle | Stratum_use |
higherGeography: Germany
decimalLatitude:
decimalLongitude:
taxon: Arthropod
eventDate: 2008 | 2009 | 2010 | 2011 | 2012
paperDOIcitation: doi: 10.1038/sdata.2015.13
description: A summary of eight traits of Coleoptera, Hemiptera, Orthoptera and Araneae, occurring in grasslands in Germany
taxaList: Coleoptera | Hemiptera | Orthoptera | Araneae
usefulClasses: adult, sweep-netting
dataStandard:
standardizationScripts:
datasetName: German Grassland Arthropods Traits Gossner
datasetID:
-
Timestamp: 8/26/2019 16:32:23
datasetDOI_URL: https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.1783
contactName: Robert E. Ricklefs
contactEmail:
license: CC0
traitList: Body_length | Wing_length | Tail_length | Tarsus_length | Toe_length | Bill_length | Bill_width | Bill_depth | Biogeographic_region
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Passerine
eventDate:
paperDOIcitation: https://doi.org/10.1002/ecy.1783
description: Passerine morphology: external measurements of approximately one‐quarter of passerine bird species
taxaList:
usefulClasses: museum specimens
dataStandard:
standardizationScripts:
datasetName: Global Passerine Morphology Ricklefs
datasetID:
-
Timestamp: 8/28/2019 10:33:07
datasetDOI_URL: https://www.try-db.org
contactName: Jens Kattge
contactEmail: jkattge@bgc-jena.mpg.de
license: CC BY
traitList: 2091 plant traits, standardized according to http://top-thesaurus.org
higherGeography: Global | Africa | Antarctica | Asia | Europe | North America | Oceania | South America
decimalLatitude:
decimalLongitude:
taxon: Tracheophyta
eventDate: about 1900 to current
paperDOIcitation: 10.1111/j.1365-2486.2011.02451.x
description: A database of databases for vascular plant traits, terrestrial and fresh-water.
taxaList: 279,875 plant taxa, standardized mainly based on The Plant List
usefulClasses: Mostly in-situ measurements on plant individuals
dataStandard: Standardization of traits according to: http://top-thesaurus.org/; standardization of taxonomy mainly based on: http://www.theplantlist.org/
standardizationScripts: https://www.try-db.org/TryWeb/Database.php
datasetName: TRY
datasetID:
-
Timestamp: 8/28/2019 17:18:01
datasetDOI_URL: http://www.compadre-db.org/
contactName: Rob Salguero-Gómez
contactEmail: rob.salguero@zoo.ox.ac.uk
license: CC-BY
traitList: Survival | Development | Reproduction | Recruitment | and many more! See here: https://github.com/jonesor/compadreDB
higherGeography: Continent | Country | Ecoregion | Lat | Lon
decimalLatitude: -90
decimalLongitude: -180
taxon: Comprehensive coverage of plants (COMPADRE) and animals (COMADRE)
eventDate: From 1945 to date
paperDOIcitation: https://doi.org/10.1111/1365-2745.12334 | https://doi.org/10.1111/1365-2656.12482
description: Demographic, taxonomic, biogeographic and phylogenetic information of thousand of plants and animals
taxaList: Plantae and Animalia
usefulClasses: Life stage, life history trait, vital rate, population growth rate
dataStandard:
standardizationScripts: https://github.com/jonesor/compadreDB
datasetName: Compadre
datasetID:
-
Timestamp: 8/28/2019 18:58:23
datasetDOI_URL: https://cran.r-project.org/web/packages/BIEN/index.html
contactName: Brian J. Enquist | Brad Boyle | Cory Merow | Xiao Feng | Dan Park |Brian S. Maitner | BIEN working group
contactEmail: bmaitner@gmail.com
license: CC BY-NC-ND
traitList: 53 plant traits
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Embryophyta
eventDate:
paperDOIcitation: https://doi.org/10.1111/2041-210X.12861
description:
taxaList:
usefulClasses: Aggregated data, primarily from published datasets
dataStandard:
standardizationScripts:
datasetName: BIEN
datasetID:
-
Timestamp: 8/29/2019 17:36:16
datasetDOI_URL: http://www.esapubs.org/archive/ecol/E088/096/default.htm
contactName: Terje Lislevand
contactEmail:
license: CC BY 4.0
traitList: "M_mass | M_mass_N | F_mass | F_mass_N | Unsexed_mass | Unsexed_mass_N | M_wing | M_wing_N | F_wing | F_wing_N | Unsexed_wing | Unsexed_wing_N | M_tarsus | M_tarsus_N | F_tarsus | F_tarsus_N | Unsexed_tarsus | Unsexed_tarsus_N | M_bill | M_bill_N | F_bill | F_bill_N | Unsexed_bill | Unsexed_bill_N | M_tail | M_tail_N | F_tail | F_tail_N | Unsexed_tail | Unsexed_tail_N | Clutch_size | Egg_mass | Mating_System | Display | Resource \n"
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Aves
eventDate:
paperDOIcitation: http://www.esapubs.org/archive/ecol/E088/096/default.htm
description: Avian body sizes in relation to fecundity, mating system, display behavior, and resource sharing
taxaList:
usefulClasses: literatureData
dataStandard:
standardizationScripts:
datasetName: Global Avian Traits Lislevand
datasetID:
-
Timestamp: 8/29/2019 17:42:27
datasetDOI_URL: http://www.esapubs.org/archive/ecol/E095/178/
contactName: Walter Jetz
contactEmail:
license: CC BY 4.0
traitList: Diet | Foraging_stratum | Nocturnal | Body_mass
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Aves | Mammalia
eventDate:
paperDOIcitation: 10.1890/13-1917.1
description: 'EltonTraits 1.0: Species-level foraging attributes of the world''s birds and mammals'
taxaList:
usefulClasses: literatureData
dataStandard:
standardizationScripts:
datasetName: EltonTraits
datasetID:
-
Timestamp: 8/29/2019 22:16:50
datasetDOI_URL: https://figshare.com/articles/Catching_crabs_a_case_study_in_local_scale_English_conservation/979288
contactName: Will Pearse
contactEmail: will.pearse@gmail.com
license: CCBY4
traitList: diameter|sex
higherGeography: Europe | United Kingdom | England | Norfolk | Wells-next-the-Sea
decimalLatitude: 52.95
decimalLongitude: 0.85
taxon: Carcinus maenas
eventDate: 2007-08
paperDOIcitation: arXiv:1404.0290
description:
taxaList: Carcinus maenas
usefulClasses: carapace
dataStandard:
standardizationScripts: https://github.com/willpearse/MADtraits/blob/master/R/downloads.R#L1180
datasetName: Norfolk Carcinus maenas Pearse
datasetID:
-
Timestamp: 9/4/2019 6:01:22
datasetDOI_URL: https://doi.org/10.6084/m9.figshare.7996328.v2
contactName: J. Aaron Hogan
contactEmail: jamesaaronhogan@gmail.com
license: CC by 4.0
traitList: "Leaf Area | LeafPermiter | LeafWidth | LeafHeight | LeafCircularity | LeafAspectRatio | LeafRoundness | LeafMass | SLA | LeafThickness | RootMass |\nRootLength | SpecificRootLength | RootProjArea | RootArea | SpecifcRootArea | RootAvgDiam | RootLenPerVol | RootVolume | RootTD | NRootTips | SRTipAbund NForks | NCrossings."
higherGeography: Asia | China | Hainan Island | Jianfengling Forest Reserve
decimalLatitude:
decimalLongitude:
taxon: Plantae | Angiosperms
eventDate: May - June 2017
paperDOIcitation: https://doi.org/10.1101/611640
description:
taxaList:
usefulClasses: plant root and leaf traits, tropical trees
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/4/2019 18:43:54
datasetDOI_URL: http://polytraits.lifewatchgreece.eu/polytraits
contactName: Sarah Faulwetter
contactEmail:
license: Creative Commons Attribution 3.0
traitList: broad range, ~60 traits
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Polychaeta
eventDate:
paperDOIcitation: doi:10.3897/BDJ.2.e1024
description: A database on biological traits of polychaetes
taxaList:
usefulClasses: adult|larval
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/5/2019 2:25:20
datasetDOI_URL: http://globalants.org/
contactName: Heloise Gibb
contactEmail: h.gibb@latrobe.edu.au
license: We have a "Terms of Use" document modelled on TRY
traitList: "Head.width.across.eyes..mm|Head.length..mm|Clypeus.length..mm|\tMandible.length..mm|Hind.femur.length..mm|Scape.length..mm|\tWeber.s.length..mm|Pronotum.width..mm|Inter.ocular.width..mm|\tMax.eye.width..mm|Whole.body.length..mm|Sculpturing|Pilosity|Number.of.Spines|Dominant.colour.head..Fig..16|Dominant.colour.mesosoma..Fig..16|Dominant.colour.gaster..Fig..16|Polymorphism|Queen.number|Worker.number|Colony.type|Colony.founding|Nest.Site|Activity|Diet\n"
higherGeography: Multiple levels - from Continent to local
decimalLatitude: -42.7
decimalLongitude: -171.8
taxon: Formicidae (ants)
eventDate: 1949-2014
paperDOIcitation: Parr, C. L., Dunn, R. R., Sanders, N. J., Weiser, M. D., Photakis, M., Bishop, T. R., ... & Gibb, H. (2017). GlobalAnts: a new database on the geography of ant traits (Hymenoptera: Formicidae). Insect Conservation and Diversity, 10(1), 5-20.
description: Part of a database that also includes assemblage and abundance data for ants
taxaList: Formicidae - should discuss how you want this as we have localised morphospecies in a lot of datasets
usefulClasses: worker ants
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/5/2019 11:37:39
datasetDOI_URL: https://doi.pangaea.de/10.1594/PANGAEA.862968
contactName: Philipp Brun
contactEmail:
license: CC BY 3.0
traitList: Body_size | Feeding_mode | Clearance_rates | Ingestion_rates | Spawning_strategy | Egg_size | Clutch_size | Fecundity | Myelination | Hibernation | Resting_eggs | Respiration_rates | Growth_rates | Development_duration
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: copepods
eventDate:
paperDOIcitation: https://doi.org/10.5194/essd-9-99-2017, 2017
description: A trait database for marine copepods
taxaList:
usefulClasses: literatureData, expertKnowledge
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/5/2019 11:45:23
datasetDOI_URL: http://genomics.senescence.info/species/
contactName: João Pedro de Magalhães
contactEmail:
license: CC BY 3.0
traitList: Female maturity | Male maturity | Gestation/Incubation | Weaning | Litter/Clutch size | Litters/Clutches per year| Inter-litter/Interbirth interval | Birth weight | Weaning weight | Adult weight | Growth rate | Maximum longevity | IMR | MRDT | Metabolic rate | Body mass | Temperature
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Animalia
eventDate:
paperDOIcitation: 10.1093/nar/gkx1042
description: AnAge Database of Animal Ageing and Longevity
taxaList:
usefulClasses: literatureData, observationalData
dataStandard:
standardizationScripts:
datasetName: AnAge
datasetID:
-
Timestamp: 9/13/2019 1:58:51
datasetDOI_URL: https://media.nature.com/original/nature-assets/ncomms/2017/170801/ncomms16047/extref/ncomms16047-s14.xlsx
contactName: Hervé Sauquet | Jürg Schönenberger
contactEmail: herve.sauquet@rbgsyd.nsw.gov.au
license: CC BY 4.0
traitList: Sex | Ovary_position | Number_of_perianth_parts | Fusion_of_perianth | Symmetry_of_perianth | Perianth_phyllotaxy | Number_of_perianth_whorls | Perianth_merism | Perianth_differentiation | Number_of_fertile_stamens | Filament | Anther_orientation | Anther_attachment | Anther_dehiscence | Androecium_structural_phyllotaxy | Number_of_androecium_structural_whorls | Androecium_structural_merism | Gynoecium_phyllotaxy | Number_of_structural_carpels | Fusion_of_ovaries | Number_of_ovules_per_functional_carpel
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Angiospermae
eventDate:
paperDOIcitation: 10.1038/ncomms16047
description: Dataset of angiosperm floral traits (mostly structural), extracted from the PROTEUS database and built for the eFLOWER project; for more information on PROTEUS and eFLOWER, see www.eflower.org
taxaList: 792 angiosperm species
usefulClasses: literatureData
dataStandard:
standardizationScripts:
datasetName: Proteus eFlower
datasetID:
-
Timestamp: 9/17/2019 4:52:57
datasetDOI_URL: https://doi.org/10.6084/m9.figshare.1499292
contactName: Stephen Garnett
contactEmail: stephen.garnett@cdu.edu.au
license: CC BY 4.0
traitList: Distribution | Morphology | Habitat | Food | Behaviour | Breeding | Mobility | Climate metrics
higherGeography: Australia
decimalLatitude:
decimalLongitude:
taxon: Aves
eventDate:
paperDOIcitation: doi:10.1038/sdata.2015.61
description: Traits for all Australian birds
taxaList:
usefulClasses: Adult
dataStandard: None
standardizationScripts: None
datasetName:
datasetID:
-
Timestamp: 9/17/2019 5:04:48
datasetDOI_URL: https://coraltraits.org/
contactName: Joshua Madin
contactEmail: coraltraits@gmail.com
license: CC0
traitList: Biomechanical | Conservation | Contextual | Ecological | Geographical | Morphological | Phylogenetic | Physiological | Reproductive | Stoichiometric
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Cnidaria | Anthozoa
eventDate:
paperDOIcitation: https://doi.org/10.1038/sdata.2016.17
description: Coral Traits Database
taxaList: 1548 coral species
usefulClasses: 68494 coral observations with 106462 trait entries of 158 traits for 1548 coral species
dataStandard: Observation and Measurement Ontology (OBOE)
standardizationScripts: https://github.com/jmadin/traits
datasetName: Coral Traits Database
datasetID:
-
Timestamp: 9/17/2019 5:21:45
datasetDOI_URL: https://doi.org/10.1111/jvs.12646
contactName: Markus Bernhardt‐Römermann
contactEmail:
license: CC-By
traitList: "growth form | stem | shoot length | life form | life strategy | protonema | Hyalin\nhairpoint | dominants | distribution of gametangia | seta | capsules | size of spores | spore ornamentation | fruiting | vegetative dispersal traits"
higherGeography: Germany
decimalLatitude:
decimalLongitude:
taxon: Embryophyta | Bryophyta
eventDate:
paperDOIcitation: https://doi.org/10.1111/jvs.12646
description: A compilation of autecological information and morphological and regenerative trait data on different stages of the life cycle of bryophytes occurring in forest ecosystems. The database contains information for 35 traits and 721 Central European bryophyte species; in total more than 23,000 trait values
taxaList: 721 Central European bryophyte species
usefulClasses: NA
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 5:44:30
datasetDOI_URL: http://doi.org/10.5061/dryad.1cv08,
contactName: Joanne Bennett
contactEmail: joanne.bennett@idiv.de
license: CC-BY
traitList: "Tmax | max_metric | error | error measure | Multiple measures | max_interval_after_LT0 | Tmax_2 | max_metric_2\terror | error measure | max_interval_before_LT100 | max_pretreatment | max_ramp | lat_max | long_max\televation_max | REF_max | location_max | N | tmin | min_metric | Multiple measures_min | min_interval_after_LT0 | tmin_2 | min_metric_2 | min_interval_before_LT100 | min_pretreatment | ramp_min\t"
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Chlorophyta | Plantae | Fungi | Animalia
eventDate:
paperDOIcitation: doi: 10.1038/sdata.2018.22
description: Thermal tolerance metrics for 2,133 species of multicellular algae, plants, fungi, and animals in 43 classes, 203 orders and 525 families from marine, intertidal, freshwater, and terrestrial realms, extracted from published studies. Updates to the data and metadata will be curated through the iDiv data portal https://idata.idiv.de/
taxaList: Chlorophyta | Plantae | Fungi | Animalia
usefulClasses: NA
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 5:49:20
datasetDOI_URL: https://doi.org/10.5061/dryad.f6t39kj
contactName: Shai Meiri
contactEmail: uncshai@post.tau.ac.il
license: CC-BY
traitList: body size | ecological | thermal biology | geographic | phylogenetic | life history data
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Reptilia
eventDate:
paperDOIcitation: https://doi.org/10.1111/geb.12773
description: Geographical, morphological, ecological, physiological and life history data for the 6,657 known species of lizards
taxaList: Reptilia
usefulClasses: NA
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 5:58:57
datasetDOI_URL: http://www.esapubs.org/archive/ecol/E096/269/#data
contactName: Nathan Myhrvold
contactEmail:
license: CC-BY
traitList: "female_maturity_d | litter_or_clutch_size_n | litters_or_clutches_per_y | adult_body_mass_g | maximum_longevity_y | gestation_d | weaning_d | birth_or_hatching_weight_g | weaning_weight_g | egg_mass_g\tincubation_d\t| fledging_age_d | longevity_y | male_maturity_d | inter_litter_or_interbirth_interval_y | female_body_mass_g | male_body_mass_g | no_sex_body_mass_g\tegg_width_mm | egg_length_mm | fledging_mass_g | adult_svl_cm\tmale_svl_cm\tfemale_svl_cm | birth_or_hatching_svl_cm | female_svl_at_maturity_cm | female_body_mass_at_maturity_g | no_sex_svl_cm | no_sex_maturity_d"
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Amniotes | Aves | Reptilia | Mammalia
eventDate:
paperDOIcitation: https://doi.org/10.1890/15-0846R.1
description: A normalized and consolidated database of up to 29 life-history parameters, containing at least one life-history parameter for 21 322 species of birds, mammals, and reptiles. In order to facilitate comparative analyses between amniote life‐history data, we created a database compiled from peer‐reviewed studies on individual species, macroecological studies of multiple species, existing life‐history databases, and other aggregated sources as well as published books and other compilations
taxaList: Amniotes | Aves | Reptilia | Mammalia
usefulClasses: NA
dataStandard:
standardizationScripts: http://www.esapubs.org/archive/ecol/E096/269/#data
datasetName:
datasetID:
-
Timestamp: 9/17/2019 6:04:17
datasetDOI_URL: https://ars.els-cdn.com/content/image/1-s2.0-S0048969711001124-mmc1.pdf
contactName: Ralf Schäfer
contactEmail:
license: CC-BY
traitList: reproduction type | food source | respiration mode| physiological sensitivity to salinity
higherGeography: Australia
decimalLatitude:
decimalLongitude:
taxon: Invertebrate families
eventDate:
paperDOIcitation: https://doi.org/10.1016/j.scitotenv.2011.01.053
description: We compiled a database on a priori selected traits for South-East Australian freshwater macroinvertebrate families
taxaList: macroinvertebrates
usefulClasses: NA
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 6:16:04
datasetDOI_URL: https://doi.org/10.1111/acv.12350
contactName: Lucie Bland
contactEmail:
license: CC-BY
traitList: Body size | Egg number | Chela size | Chela shape | Habitat breadth | Habitat type
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Arthropoda | Crustacea | Malacostraca
eventDate:
paperDOIcitation: https://doi.org/10.1111/acv.12350
description: Data on intrinsic (biology and ecology) and extrinsic (environment and threats) factors for 450 crayfish species assessed on the IUCN Red List
taxaList: Arthropoda | Crustacea | Malacostraca
usefulClasses: IUCN listed taxa
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 6:20:31
datasetDOI_URL: https://doi.pangaea.de/10.1594/PANGAEA.862968
contactName: Phillip Brun
contactEmail:
license: CC-BY
traitList: "body size | feeding mode | egg size | spawning strategy | respiration rate | \n myelination"
higherGeography: Global | Marine
decimalLatitude:
decimalLongitude:
taxon: Animalia | Arthropoda | Copepoda
eventDate:
paperDOIcitation: 10.5194/essd-2016-30
description: A trait database for marine copepods. We compiled trait information on marine pelagic copepods, a major group of zooplankton, from the published literature and from experts, and organised the data into a structured database. We collected 9345 records for 14 functional traits.
taxaList:
usefulClasses: Marine
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 6:39:19
datasetDOI_URL: http://www.fishbase.org/search.php
contactName: Rainer Froese
contactEmail:
license: CC-BY-NC
traitList: biology | trophic ecology | life history
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Animalia | Chordata | Vertebrata | Fin Fish
eventDate:
paperDOIcitation: http://fishbase.org/search.php
description: FishBase is a global biodiversity information system on finfishes. It provides key facts on population dynamics for 200 major commercial species and has a wider range of data on all finfish species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses
taxaList: 33,000 fish species
usefulClasses: NA
dataStandard:
standardizationScripts:
datasetName: FishBase
datasetID:
-
Timestamp: 9/17/2019 6:45:58
datasetDOI_URL: http://www.fishtraits.info/search/key/
contactName: Emmanuel Frimpong
contactEmail:
license: CC-BY
traitList: trophic ecology | body size | reproductive ecology | life history | habitat preferences | salinity and temperature tolerances
higherGeography: United States
decimalLatitude:
decimalLongitude:
taxon: Chordata | Vertebrata | Fish
eventDate:
paperDOIcitation: https://doi.org/10.1577/1548-8446-34.10.487
description: We have compiled a database of > 100 traits for 809 (731 native and 78 nonnative) fish species found in freshwaters of the conterminous United States, including 37 native families and 145 native genera.The database, named Fish Traits, contains information on four major categories of traits: (1) trophic ecology; (2) body size, reproductive ecology, and life history; (3) habitat preferences; and (4) salinity and temperature tolerances
taxaList: Chordata | Vertebrata | Fish
usefulClasses: NA
dataStandard:
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datasetID:
-
Timestamp: 9/17/2019 6:53:09
datasetDOI_URL: https://doi.org/10.6084/m9.figshare.c.3301274.v1
contactName: Kate Jones
contactEmail:
license: CC-BY
traitList: life‐history | ecological | geographic | taxonomic
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Chordata | Mammalia
eventDate:
paperDOIcitation: https://doi.org/10.1890/08-1494.1
description: Species‐level data set compiled for analysis of life history, ecology, and geography of all known extant and recently extinct mammals
taxaList: Chordata | Mammalia
usefulClasses: NA
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 7:01:23
datasetDOI_URL: https://doi.org/10.5061/dryad.bp26v20
contactName: Søren Faurby
contactEmail:
license: CC-0
traitList: Aerial | Diet.Invertebrate | Diet.Plant | Diet.Vertebrate | Freshwater | Island.Endemicity | Life.Habit.Method | Marine | Mass.Comparison | Mass.g | Terrestrial
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Chordata | Mammalia
eventDate:
paperDOIcitation: 10.1002/ecy.2443
description: PHYLACINE, The Phylogenetic Atlas of Mammal Macroecology. This taxonomically integrated platform contains phylogenies, range maps, trait data, and threat status for all 5,831 known mammal species that lived since the last interglacial (~130,000 years ago until present)
taxaList: 5,831 mammals
usefulClasses: extinct taxa
dataStandard:
standardizationScripts:
datasetName: PHYLACINE
datasetID:
-
Timestamp: 9/17/2019 7:41:16
datasetDOI_URL: https://doi.org/10.5281/zenodo.2600338
contactName: Carmen Galán-Acedo
contactEmail:
license: CC-BY
traitList: home range size | locomotion type | diel activity | trophic guild | body mass | habitat type | current conservation status | population trend | geographic realm
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Mamalia | Primates
eventDate:
paperDOIcitation: https://doi.org/10.1038/s41597-019-0059-9
description: A database on some important ecological traits of the world’s primates (504 species), including home range size, locomotion type, diel activity, trophic guild, body mass, habitat type, current conservation status, population trend, and geographic realm. We compiled this information through a careful review of 1,216 studies published between 1941 and 2018
taxaList: 504 primate species
usefulClasses: NA
dataStandard:
standardizationScripts:
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datasetID:
-
Timestamp: 9/17/2019 8:14:03
datasetDOI_URL: http://esapubs.org/archive/ecol/E082/042/appendix-A.htm
contactName: Diana Fisher
contactEmail:
license: CC-BY
traitList: Adult female mass | Age at weaning | arboreality | diet type | diurnality | Female age at maturity | Gestation length | Inter-birth interval | Litter size | Mass at birth | Mass at pouch vacation | Mass at weaning | Maximum lifespan | Mean group size | Population density | shelter type
higherGeography: Australia | Papua New Guinea | South America
decimalLatitude:
decimalLongitude:
taxon: Mammalia | Marsupials
eventDate:
paperDOIcitation: https://doi.org/10.1890/0012-9658(2001)082[3531:TEBOLH]2.0.CO;2
description: Marsupial trait data
taxaList: Marsupials
usefulClasses: NA
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 8:21:25
datasetDOI_URL: https://doi.org/10.5061/dryad.jr3kh
contactName: Tobias Jeppsson
contactEmail:
license: CC-0
traitList: body size | generation time | number of larval host plant species | adult activity period | overwintering stage before reproduction | substrate utilization breadth
higherGeography: Sweden
decimalLatitude:
decimalLongitude:
taxon: Beetles | Coleoptera | Cerambycidae
eventDate:
paperDOIcitation: https://doi.org/10.1111/acv.12099
description: We compiled information on species’ traits for all residentSwedish longhorn beetles (Coleoptera: Cerambycidae) frompublished sources.
taxaList:
usefulClasses: IUCN red list
dataStandard:
standardizationScripts:
datasetName:
datasetID:
-
Timestamp: 9/17/2019 8:24:22
datasetDOI_URL: https://doi.org/10.5061/dryad.hp269
contactName: Katherine Eisen
contactEmail:
license: CC-0
traitList: gynodioecious
higherGeography: Global
decimalLatitude:
decimalLongitude:
taxon: Plantae | Angiospermae
eventDate:
paperDOIcitation: https://doi.org/10.1086/684260
description: angiosperm-wide database of gynodioecious species
taxaList:
usefulClasses: NA
dataStandard:
standardizationScripts:
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datasetID:
-
Timestamp: 9/17/2019 8:30:45
datasetDOI_URL: https://doi.org/10.5285/2a353d2d-c1b9-4bf7-8702-9e78910844bc
contactName: Jon Webb
contactEmail:
license: CC-BY
traitList: habitat-related traits | feeding guilds | conservation status | biotic interactions
higherGeography: England
decimalLatitude:
decimalLongitude:
taxon: Invertebrates
eventDate:
paperDOIcitation: https://doi.org/10.5285/2a353d2d-c1b9-4bf7-8702-9e78910844bc
description: Contains habitat-related traits, feeding guilds, conservation status (including rarity and threat status), legal protection data and associations with other taxa for just over 11,700 invertebrates
taxaList: 11700 invertebrates
usefulClasses: NA
dataStandard:
standardizationScripts:
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datasetID:
-
Timestamp: 9/30/2019 15:42:02
datasetDOI_URL: https://doi.org/10.5061/dryad.vk24fr1
contactName: Esra H. Sohlström | Malte Jochum
contactEmail: esra.sohlstroem@idiv.de
license: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
traitList: live body mass | body length | body width | taxonomic information
higherGeography: Tropical | Sumatra | Jambi province; Temperate | Germany | Lower Saxony
decimalLatitude:
decimalLongitude:
taxon: Araneae | Coleoptera | Dermaptera | Dictyoptera | Diptera | Geophilomorpha | Glomerida | Hemiptera | Hymenoptera | Isopoda | Julida | Lepidoptera | Lithobiomorpha | Neuroptera | Odonata | Opiliones | Orthoptera | Polydesmida | Pseudoscorpionida | Psocoptera | Scolopendromorpha
eventDate: 2014
paperDOIcitation: 10.1002/ece3.4702
description: Length-mass regression dataset to calculate live (fresh) body mass from body length, width, taxonomic group, and geographic region.
taxaList:
usefulClasses: length mass regression
dataStandard:
standardizationScripts:
datasetName: Tropical and temperate macroinvertebrate morphology Sohlström et al
datasetID: 
rachaelgallagher
bmaitner
jmadin
@rachaelgallagher @jmadin et al. I've added a use case for dataset registry review process in our architecture document here: https://docs.google.com/document/d/1O-B4fJ-60URy_NODngD3j5NtrFfkzj94zFYDZsd_l3U/edit#bookmark=id.1e47on72nbqp . I am hoping we can use these recent submission as a way to practice the process, perhaps first manually, then start automating parts when needed. I expect this to be clunky at first, perhaps using a little script to generate dataset .md files. Curious to hear your ideas.
Related to https://github.com/open-traits-network/open-traits-network.github.io/issues/37 .
table extracted from https://docs.google.com/spreadsheets/d/e/2PACX-1vTGsH57fb-H1J-n3kCXrN_h6nCsZDd9TSXqXPxC0VEXZrzCpR0KjhoESJP_2JQHtU9OXRPtRx8e129Q/pub?output=csv :