Open sergpolly opened 2 years ago
more points dug out of our slack:
how else can we recycle pairwise chromosomal counts - ideas ? right now we try to plot these counts in a form of a heatmap with rows as samples and columns as counts of inter-chromosomal interactions (sorted and truncated at some arbitrary point)
can we condense it into something smaller but still useful - e.g. cis/trans on a per chromosome level ? maybe per-chromosome coverage (this would require chromsizes though) ?
yeah - I guess ideally one would infer copy-number variations and potential transolcations from this ...