how to plot interchromosome interactions

open2c / coolpuppy

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

MIT License

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how to plot interchromosome interactions #113

Closed BenxiaHu closed 1 year ago

BenxiaHu commented 1 year ago

Hello, I was just wondering how to plot APA for interchromosome interactions? I just used the --trans and --expected test_expected_trans.tsv. do you think what i did was correct?

Phlya commented 1 year ago

Yes, sounds correct!

Phlya commented 1 year ago

Here is the section in the tutorial about it FYI, hope it helped! https://coolpuppy.readthedocs.io/en/latest/Examples/Walkthrough_CLI.html#trans-inter-chromosomal-pileups