how to generate the expected.tsv?[Q]

[JiaoLaboratory]

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Dear coolpuppy developer, thank you for you tool, that is so good, I want to to know how can i generate the background file (expected.tsv) using coolpuppy ?

[Phlya]

Please see the tutorials. E.g. here for Python API: https://coolpuppy.readthedocs.io/en/latest/Examples/Walkthrough_API.html#pileups-of-observed-over-expected-interactions and here for CLI: https://coolpuppy.readthedocs.io/en/latest/Examples/Walkthrough_CLI.html#chromosome-arm-wide-expected-normalization