open2c / coolpuppy

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
MIT License
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A large number of NAs ​​appear on the diagonal[Q] #156

Closed G1298192734a closed 1 month ago

G1298192734a commented 1 month ago

State the question A clear and concise description of the question. I simply used coolpup.pileup and the result was a lot of NAs, which was weird What have you tried?

G1298192734a commented 1 month ago

https://github.com/open2c/coolpuppy/issues/18#issuecomment-610874969 The problem has been solved, just set min_diags to 0 as stated here Thanks a lot