Have an option to use fastq-dump even to download a whole .sra file

open2c / distiller-nf

A modular Hi-C mapping pipeline

MIT License

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Have an option to use fastq-dump even to download a whole .sra file #144

Open mimakaev opened 5 years ago

mimakaev commented 5 years ago

Download step fails sometimes because ftp server on GEO is very screwed up, and some folders can just disappear. It would be nice to have an option to simply bypass that and use fastq-dump, which I believe always works.