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open2c / distiller-nf

A modular Hi-C mapping pipeline
MIT License
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Allow DRR accessions; add a comment line for sra-tools ncbi requirement #168

Closed agalitsyna closed 2 years ago

agalitsyna commented 2 years ago
  1. sra-toolkit can work with three types of accessions, depending on the source of data. For SRA the accessions start with SRR, for EBi - ERR, for DDBJ - DRR. Distiller now allows all these types of accessions.
  2. sra-toolkit requires configuration folder ".ncbi" present in the home directory. However, when running distiller locally, it cannot find its location. I added a fix line which might be uncommented by pro users.
agalitsyna commented 2 years ago

This PR has the full functionality of previous distiller and extends it with minor fixes.