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open2c / inspectro

Hi-C spectral analysis workflow
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Cluster numbers showed in heatmap and scatter plot don't match ? #6

Closed liu-zhiyang closed 9 months ago

liu-zhiyang commented 11 months ago

Hi, I am trying to do egien decompsition with inspectro and I have got the results. But when I check the figures, I find the cluster number showed in heatmap and scatter plot don't match. For example, in E1-E128.kmeans_sm7.heatmap file, there are 7 clusters, but in E1-E128.kmeans_sm7.scatters file, there are 8 clusters named 0 to 7.

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I wonder if it's normal or some one is omitted in heatmap? Thank you very much!

nvictus commented 9 months ago

Cluster 7 corresponds to genomic bins that were filtered out from analysis, so it is omitted in the visualization.