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open2c / open2c_examples

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Add new notebook #28

Open Phlya opened 12 months ago

Phlya commented 12 months ago

Started a new notebook to show how to manipulate cooler files based on the rearrange_cooler example notebook.

Also fixed the make_chromarms issue. Now fixed in bioframe, wait for its release to merge this.

Note that after rerunning the contacts_vs_distance notebook one of the final plots is ugly and I don't understand why!

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Phlya commented 11 months ago

https://github.com/open2c/open2c_examples/blob/cooler-manipulation-notebook/cooler_manipulation.ipynb Here is the link to the new notebook, to make it easier btw

Phlya commented 11 months ago

@gfudenberg is it better now?

Phlya commented 9 months ago

@gfudenberg could you have a look at this again please?